OpenMS  2.4.0
IonizationSimulation Member List

This is the complete list of members for IonizationSimulation, including all inherited members.

basic_residues_IonizationSimulationprivate
check_defaults_DefaultParamHandlerprotected
CMD enum valueProgressLogger
countIonizedResidues_(const AASequence &) constIonizationSimulationprivate
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
endProgress() constProgressLogger
error_name_DefaultParamHandlerprotected
ESI enum valueIonizationSimulation
esi_adducts_IonizationSimulationprivate
esi_impurity_probabilities_IonizationSimulationprivate
esi_probability_IonizationSimulationprivate
getDefaults() constDefaultParamHandler
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
GUI enum valueProgressLogger
ionization_type_IonizationSimulationprivate
IonizationSimulation()IonizationSimulation
IonizationSimulation(SimTypes::MutableSimRandomNumberGeneratorPtr)IonizationSimulationexplicit
IonizationSimulation(const IonizationSimulation &source)IonizationSimulation
IonizationType enum nameIonizationSimulation
ionize(SimTypes::FeatureMapSim &features, ConsensusMap &charge_consensus, SimTypes::MSSimExperiment &experiment)IonizationSimulation
ionizeEsi_(SimTypes::FeatureMapSim &, ConsensusMap &charge_consensus)IonizationSimulationprivate
ionizeMaldi_(SimTypes::FeatureMapSim &, ConsensusMap &charge_consensus)IonizationSimulationprivate
isFeatureValid_(const Feature &feature)IonizationSimulationinlineprivate
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
MALDI enum valueIonizationSimulation
maldi_probabilities_IonizationSimulationprivate
max_adduct_charge_IonizationSimulationprivate
maximal_mz_measurement_limit_IonizationSimulationprivate
minimal_mz_measurement_limit_IonizationSimulationprivate
nextProgress() constProgressLogger
NONE enum valueProgressLogger
operator=(const IonizationSimulation &source)IonizationSimulation
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
rnd_gen_IonizationSimulationprotected
setDefaultParams_()IonizationSimulationprivate
setFeatureProperties_(Feature &f, const double &adduct_mass, const String &adduct_formula, const SimTypes::SimChargeType charge, const SimTypes::SimIntensityType new_intensity, const Size parent_index)IonizationSimulationprivate
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_() overrideIonizationSimulationprivatevirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~IonizationSimulation() overrideIonizationSimulation
~ProgressLogger()ProgressLogger