OpenMS  2.4.0
IsotopeWaveletTransform< PeakType > Member List

This is the complete list of members for IsotopeWaveletTransform< PeakType >, including all inherited members.

av_MZ_spacing_IsotopeWaveletTransform< PeakType >protected
Box typedefIsotopeWaveletTransform< PeakType >
c_mzs_IsotopeWaveletTransform< PeakType >protected
c_spacings_IsotopeWaveletTransform< PeakType >protected
checkPositionForPlausibility_(const TransSpectrum &candidate, const MSSpectrum &ref, const double seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const double transintens, const double prev_score)IsotopeWaveletTransform< PeakType >protectedvirtual
checkPositionForPlausibility_(const MSSpectrum &candidate, const MSSpectrum &ref, const double seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const double transintens, const double prev_score)IsotopeWaveletTransform< PeakType >protectedvirtual
checkPPMTheoModel_(const MSSpectrum &ref, const double c_mz, const UInt c)IsotopeWaveletTransform< PeakType >protectedvirtual
closed_boxes_IsotopeWaveletTransform< PeakType >protected
clusterSeeds_(const TransSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const bool check_PPMs)IsotopeWaveletTransform< PeakType >protected
clusterSeeds_(const MSSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const bool check_PPMs)IsotopeWaveletTransform< PeakType >protectedvirtual
computeMinSpacing(const MSSpectrum &c_ref)IsotopeWaveletTransform< PeakType >virtual
data_length_IsotopeWaveletTransform< PeakType >protected
end_boxes_IsotopeWaveletTransform< PeakType >protected
extendBox_(const PeakMap &map, const Box &box)IsotopeWaveletTransform< PeakType >protected
from_max_to_left_IsotopeWaveletTransform< PeakType >protected
from_max_to_right_IsotopeWaveletTransform< PeakType >protected
front_boxes_IsotopeWaveletTransform< PeakType >protected
getAvIntens_(const TransSpectrum &scan)IsotopeWaveletTransform< PeakType >inlineprotected
getAvIntens_(const MSSpectrum &scan)IsotopeWaveletTransform< PeakType >inlineprotected
getAvMZSpacing_(const MSSpectrum &scan)IsotopeWaveletTransform< PeakType >inlineprotected
getClosedBoxes()IsotopeWaveletTransform< PeakType >inlinevirtual
getLinearInterpolation(const typename MSSpectrum::const_iterator &left_iter, const double mz_pos, const typename MSSpectrum::const_iterator &right_iter)IsotopeWaveletTransform< PeakType >inline
getLinearInterpolation(const double mz_a, const double intens_a, const double mz_pos, const double mz_b, const double intens_b)IsotopeWaveletTransform< PeakType >inline
getMaxScanSize() constIsotopeWaveletTransform< PeakType >inline
getMinSpacing() constIsotopeWaveletTransform< PeakType >inline
getPPMs_(const double mass_a, const double mass_b) constIsotopeWaveletTransform< PeakType >inlineprotected
getSdIntens_(const TransSpectrum &scan, const double mean)IsotopeWaveletTransform< PeakType >inlineprotected
getSdIntens_(const MSSpectrum &scan, const double mean)IsotopeWaveletTransform< PeakType >inlineprotected
getSigma() constIsotopeWaveletTransform< PeakType >inline
getTransform(MSSpectrum &c_trans, const MSSpectrum &c_ref, const UInt c)IsotopeWaveletTransform< PeakType >virtual
getTransformHighRes(MSSpectrum &c_trans, const MSSpectrum &c_ref, const UInt c)IsotopeWaveletTransform< PeakType >virtual
hr_data_IsotopeWaveletTransform< PeakType >protected
identifyCharge(const MSSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const double ampl_cutoff, const bool check_PPMs)IsotopeWaveletTransform< PeakType >virtual
indices_IsotopeWaveletTransform< PeakType >protected
initializeScan(const MSSpectrum &c_ref, const UInt c=0)IsotopeWaveletTransform< PeakType >virtual
intenstype_IsotopeWaveletTransform< PeakType >protected
interpol_xs_IsotopeWaveletTransform< PeakType >protected
interpol_ys_IsotopeWaveletTransform< PeakType >protected
IsotopeWaveletTransform(const double min_mz, const double max_mz, const UInt max_charge, const Size max_scan_size=0, const bool hr_data=false, const String intenstype="ref")IsotopeWaveletTransform< PeakType >
IsotopeWaveletTransform()IsotopeWaveletTransform< PeakType >protected
mapSeeds2Features(const PeakMap &map, const UInt RT_votes_cutoff)IsotopeWaveletTransform< PeakType >
max_charge_IsotopeWaveletTransform< PeakType >protected
max_mz_cutoff_IsotopeWaveletTransform< PeakType >protected
max_num_peaks_per_pattern_IsotopeWaveletTransform< PeakType >protected
max_scan_size_IsotopeWaveletTransform< PeakType >protected
mergeFeatures(IsotopeWaveletTransform< PeakType > *later_iwt, const UInt RT_interleave, const UInt RT_votes_cutoff)IsotopeWaveletTransform< PeakType >
min_spacing_IsotopeWaveletTransform< PeakType >protected
open_boxes_IsotopeWaveletTransform< PeakType >protected
peptideMassRule_(const double c_mass) constIsotopeWaveletTransform< PeakType >inlineprotected
prod_IsotopeWaveletTransform< PeakType >protected
psi_IsotopeWaveletTransform< PeakType >protected
push2Box_(const double mz, const UInt scan, UInt c, const double score, const double intens, const double rt, const UInt MZ_begin, const UInt MZ_end, const double ref_intens)IsotopeWaveletTransform< PeakType >protectedvirtual
push2TmpBox_(const double mz, const UInt scan, UInt charge, const double score, const double intens, const double rt, const UInt MZ_begin, const UInt MZ_end)IsotopeWaveletTransform< PeakType >protectedvirtual
sampleTheCMarrWavelet_(const MSSpectrum &scan, const Int wavelet_length, const Int mz_index, const UInt charge)IsotopeWaveletTransform< PeakType >inlineprotected
scores_IsotopeWaveletTransform< PeakType >protected
scoreThis_(const TransSpectrum &candidate, const UInt peak_cutoff, const double seed_mz, const UInt c, const double ampl_cutoff)IsotopeWaveletTransform< PeakType >protectedvirtual
scoreThis_(const MSSpectrum &candidate, const UInt peak_cutoff, const double seed_mz, const UInt c, const double ampl_cutoff)IsotopeWaveletTransform< PeakType >protectedvirtual
setSigma(const double sigma)IsotopeWaveletTransform< PeakType >inline
sigma_IsotopeWaveletTransform< PeakType >protected
tmp_boxes_IsotopeWaveletTransform< PeakType >protected
updateBoxStates(const PeakMap &map, const Size scan_index, const UInt RT_interleave, const UInt RT_votes_cutoff, const Int front_bound=-1, const Int end_bound=-1)IsotopeWaveletTransform< PeakType >
xs_IsotopeWaveletTransform< PeakType >protected
zeros_IsotopeWaveletTransform< PeakType >protected
~IsotopeWaveletTransform()IsotopeWaveletTransform< PeakType >virtual