align(std::vector< DataType > &data, std::vector< TransformationDescription > &transformations, Int reference_index=-1) | MapAlignmentAlgorithmIdentification | inline |
check_defaults_ | DefaultParamHandler | protected |
checkParameters_(const Size runs) | MapAlignmentAlgorithmIdentification | protected |
CMD enum value | ProgressLogger | |
computeMedians_(SeqToList &rt_data, SeqToValue &medians, bool sorted=false) | MapAlignmentAlgorithmIdentification | protected |
computeTransformations_(std::vector< SeqToList > &rt_data, std::vector< TransformationDescription > &transforms, bool sorted=false) | MapAlignmentAlgorithmIdentification | protected |
current_logger_ | ProgressLogger | mutableprotected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
endProgress() const | ProgressLogger | |
error_name_ | DefaultParamHandler | protected |
getDefaults() const | DefaultParamHandler | |
getLogType() const | ProgressLogger | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getReference_() | MapAlignmentAlgorithmIdentification | protected |
getRetentionTimes_(std::vector< PeptideIdentification > &peptides, SeqToList &rt_data) | MapAlignmentAlgorithmIdentification | protected |
getRetentionTimes_(PeakMap &experiment, SeqToList &rt_data) | MapAlignmentAlgorithmIdentification | protected |
getRetentionTimes_(MapType &features, SeqToList &rt_data) | MapAlignmentAlgorithmIdentification | inlineprotected |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
MapAlignmentAlgorithmIdentification() | MapAlignmentAlgorithmIdentification | |
MapAlignmentAlgorithmIdentification(const MapAlignmentAlgorithmIdentification &) | MapAlignmentAlgorithmIdentification | private |
min_run_occur_ | MapAlignmentAlgorithmIdentification | protected |
nextProgress() const | ProgressLogger | |
NONE enum value | ProgressLogger | |
operator=(const MapAlignmentAlgorithmIdentification &) | MapAlignmentAlgorithmIdentification | private |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
recursion_depth_ | ProgressLogger | protectedstatic |
reference_ | MapAlignmentAlgorithmIdentification | protected |
reference_index_ | MapAlignmentAlgorithmIdentification | protected |
SeqToList typedef | MapAlignmentAlgorithmIdentification | protected |
SeqToValue typedef | MapAlignmentAlgorithmIdentification | protected |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
setReference(DataType &data) | MapAlignmentAlgorithmIdentification | inline |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | protected |
type_ | ProgressLogger | mutableprotected |
updateMembers_() | DefaultParamHandler | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~MapAlignmentAlgorithmIdentification() override | MapAlignmentAlgorithmIdentification | |
~ProgressLogger() | ProgressLogger | |