OpenMS  2.4.0
ModificationsDB Member List

This is the complete list of members for ModificationsDB, including all inherited members.

addModification(ResidueModification *new_mod)ModificationsDB
CrossLinksDB classModificationsDBfriend
findModificationIndex(const String &mod_name) constModificationsDB
getAllSearchModifications(std::vector< String > &modifications) constModificationsDB
getBestModificationByDiffMonoMass(double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY)ModificationsDB
getBestModificationByMonoMass(double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY)ModificationsDB
getInstance(OpenMS::String unimod_file="CHEMISTRY/unimod.xml", OpenMS::String psimod_file="CHEMISTRY/PSI-MOD.obo", OpenMS::String xlmod_file="CHEMISTRY/XLMOD.obo")ModificationsDBinlinestatic
getModification(Size index) constModificationsDB
getModification(const String &mod_name, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) constModificationsDB
getNumberOfModifications() constModificationsDB
has(String modification) constModificationsDB
is_instantiated_ModificationsDBprotectedstatic
isInstantiated()ModificationsDBstatic
modification_names_ModificationsDBprotected
ModificationsDB(OpenMS::String unimod_file="CHEMISTRY/unimod.xml", OpenMS::String psimod_file="CHEMISTRY/PSI-MOD.obo", OpenMS::String xlmod_file="CHEMISTRY/XLMOD.obo")ModificationsDBprivate
ModificationsDB(const ModificationsDB &residue_db)ModificationsDBprivate
mods_ModificationsDBprotected
operator=(const ModificationsDB &aa)ModificationsDBprivate
readFromOBOFile(const String &filename)ModificationsDBprivate
readFromUnimodXMLFile(const String &filename)ModificationsDBprivate
residuesMatch_(const String &residue, char origin) constModificationsDBprotected
searchModifications(std::set< const ResidueModification *> &mods, const String &mod_name, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) constModificationsDB
searchModificationsByDiffMonoMass(std::vector< String > &mods, double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY)ModificationsDB
~ModificationsDB()ModificationsDBprivatevirtual