OpenMS
2.4.0
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This is the complete list of members for PeakIntegrator, including all inherited members.
baseline_type_ | PeakIntegrator | private |
BASELINE_TYPE_BASETOBASE | PeakIntegrator | static |
BASELINE_TYPE_VERTICALDIVISION | PeakIntegrator | static |
BASELINE_TYPE_VERTICALDIVISION_MAX | PeakIntegrator | static |
BASELINE_TYPE_VERTICALDIVISION_MIN | PeakIntegrator | static |
calculatePeakShapeMetrics(const MSChromatogram &chromatogram, const double left, const double right, const double peak_height, const double peak_apex_pos) const | PeakIntegrator | |
calculatePeakShapeMetrics(const MSChromatogram &chromatogram, MSChromatogram::ConstIterator &left, MSChromatogram::ConstIterator &right, const double peak_height, const double peak_apex_pos) const | PeakIntegrator | |
calculatePeakShapeMetrics(const MSSpectrum &spectrum, const double left, const double right, const double peak_height, const double peak_apex_pos) const | PeakIntegrator | |
calculatePeakShapeMetrics(const MSSpectrum &spectrum, MSSpectrum::ConstIterator &left, MSSpectrum::ConstIterator &right, const double peak_height, const double peak_apex_pos) const | PeakIntegrator | |
calculatePeakShapeMetrics_(const PeakContainerT &pc, double left, double right, const double peak_height, const double peak_apex_pos) const | PeakIntegrator | protected |
check_defaults_ | DefaultParamHandler | protected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
emg_ | PeakIntegrator | private |
EMGPreProcess_(const PeakContainerT &pc, PeakContainerT &emg_pc, double &left, double &right) const | PeakIntegrator | private |
error_name_ | DefaultParamHandler | protected |
estimateBackground(const MSChromatogram &chromatogram, const double left, const double right, const double peak_apex_pos) const | PeakIntegrator | |
estimateBackground(const MSChromatogram &chromatogram, MSChromatogram::ConstIterator &left, MSChromatogram::ConstIterator &right, const double peak_apex_pos) const | PeakIntegrator | |
estimateBackground(const MSSpectrum &spectrum, const double left, const double right, const double peak_apex_pos) const | PeakIntegrator | |
estimateBackground(const MSSpectrum &spectrum, MSSpectrum::ConstIterator &left, MSSpectrum::ConstIterator &right, const double peak_apex_pos) const | PeakIntegrator | |
estimateBackground_(const PeakContainerT &pc, double left, double right, const double peak_apex_pos) const | PeakIntegrator | protected |
findPosAtPeakHeightPercent_(PeakContainerConstIteratorT it_begin, PeakContainerConstIteratorT it_end, const double peak_height, const double percent, const bool is_left_half) const | PeakIntegrator | protected |
fit_EMG_ | PeakIntegrator | private |
getDefaultParameters(Param ¶ms) | PeakIntegrator | |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
integratePeak(const MSChromatogram &chromatogram, const double left, const double right) const | PeakIntegrator | |
integratePeak(const MSChromatogram &chromatogram, MSChromatogram::ConstIterator &left, MSChromatogram::ConstIterator &right) const | PeakIntegrator | |
integratePeak(const MSSpectrum &spectrum, const double left, const double right) const | PeakIntegrator | |
integratePeak(const MSSpectrum &spectrum, MSSpectrum::ConstIterator &left, MSSpectrum::ConstIterator &right) const | PeakIntegrator | |
integratePeak_(const PeakContainerT &pc, double left, double right) const | PeakIntegrator | protected |
integration_type_ | PeakIntegrator | private |
INTEGRATION_TYPE_INTENSITYSUM | PeakIntegrator | static |
INTEGRATION_TYPE_SIMPSON | PeakIntegrator | static |
INTEGRATION_TYPE_TRAPEZOID | PeakIntegrator | static |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
PeakIntegrator() | PeakIntegrator | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
simpson(MSChromatogram::ConstIterator it_begin, MSChromatogram::ConstIterator it_end) const | PeakIntegrator | private |
simpson(MSSpectrum::ConstIterator it_begin, MSSpectrum::ConstIterator it_end) const | PeakIntegrator | private |
simpson_(PeakContainerConstIteratorT it_begin, PeakContainerConstIteratorT it_end) const | PeakIntegrator | protected |
subsections_ | DefaultParamHandler | protected |
updateMembers_() | PeakIntegrator | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~PeakIntegrator() | PeakIntegrator | virtual |