OpenMS  2.4.0
PeptideAndProteinQuant Member List

This is the complete list of members for PeptideAndProteinQuant, including all inherited members.

check_defaults_DefaultParamHandlerprotected
countPeptides_(std::vector< PeptideIdentification > &peptides)PeptideAndProteinQuantprivate
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getAccession_(const std::set< String > &pep_accessions, std::map< String, String > &accession_to_leader)PeptideAndProteinQuantprivate
getAnnotation_(std::vector< PeptideIdentification > &peptides)PeptideAndProteinQuantprivate
getDefaults() constDefaultParamHandler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getPeptideResults()PeptideAndProteinQuant
getProteinResults()PeptideAndProteinQuant
getStatistics()PeptideAndProteinQuant
getSubsections() constDefaultParamHandler
normalizePeptides_()PeptideAndProteinQuantprivate
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
orderBest_(const std::map< T, SampleAbundances > &abundances, std::vector< T > &result)PeptideAndProteinQuantinlineprivate
param_DefaultParamHandlerprotected
pep_quant_PeptideAndProteinQuantprivate
PeptideAndProteinQuant()PeptideAndProteinQuant
PeptideQuant typedefPeptideAndProteinQuant
prot_quant_PeptideAndProteinQuantprivate
ProteinQuant typedefPeptideAndProteinQuant
quantifyFeature_(const FeatureHandle &feature, const PeptideHit &hit)PeptideAndProteinQuantprivate
quantifyPeptides(const std::vector< PeptideIdentification > &peptides=std::vector< PeptideIdentification >())PeptideAndProteinQuant
quantifyProteins(const ProteinIdentification &proteins=ProteinIdentification())PeptideAndProteinQuant
readQuantData(FeatureMap &features)PeptideAndProteinQuant
readQuantData(ConsensusMap &consensus)PeptideAndProteinQuant
readQuantData(std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides)PeptideAndProteinQuant
SampleAbundances typedefPeptideAndProteinQuant
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
stats_PeptideAndProteinQuantprivate
subsections_DefaultParamHandlerprotected
updateMembers_() overridePeptideAndProteinQuantprivatevirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~PeptideAndProteinQuant() overridePeptideAndProteinQuantinline