OpenMS
2.4.0
OpenMS
ProteinIdentification
ProteinIdentification Member List
This is the complete list of members for
ProteinIdentification
, including all inherited members.
assignRanks
()
ProteinIdentification
AVERAGE
enum value
ProteinIdentification
clearMetaInfo
()
MetaInfoInterface
computeCoverage
(const std::vector< PeptideIdentification > &pep_ids)
ProteinIdentification
createIfNotExists_
()
MetaInfoInterface
inline
protected
date_
ProteinIdentification
protected
findHit
(const String &accession)
ProteinIdentification
getDateTime
() const
ProteinIdentification
getHits
() const
ProteinIdentification
getHits
()
ProteinIdentification
getIdentifier
() const
ProteinIdentification
getIndistinguishableProteins
() const
ProteinIdentification
getIndistinguishableProteins
()
ProteinIdentification
getKeys
(std::vector< String > &keys) const
MetaInfoInterface
getKeys
(std::vector< UInt > &keys) const
MetaInfoInterface
getMetaValue
(const String &name) const
MetaInfoInterface
getMetaValue
(UInt index) const
MetaInfoInterface
getPrimaryMSRunPath
(StringList &toFill) const
ProteinIdentification
getProteinGroups
() const
ProteinIdentification
getProteinGroups
()
ProteinIdentification
getScoreType
() const
ProteinIdentification
getSearchEngine
() const
ProteinIdentification
getSearchEngineVersion
() const
ProteinIdentification
getSearchParameters
() const
ProteinIdentification
getSearchParameters
()
ProteinIdentification
getSignificanceThreshold
() const
ProteinIdentification
higher_score_better_
ProteinIdentification
protected
HitType
typedef
ProteinIdentification
id_
ProteinIdentification
protected
indistinguishable_proteins_
ProteinIdentification
protected
insertHit
(const ProteinHit &input)
ProteinIdentification
insertIndistinguishableProteins
(const ProteinGroup &group)
ProteinIdentification
insertProteinGroup
(const ProteinGroup &group)
ProteinIdentification
isHigherScoreBetter
() const
ProteinIdentification
isMetaEmpty
() const
MetaInfoInterface
meta_
MetaInfoInterface
protected
MetaInfoInterface
()
MetaInfoInterface
MetaInfoInterface
(const MetaInfoInterface &rhs)
MetaInfoInterface
metaRegistry
()
MetaInfoInterface
static
metaValueExists
(const String &name) const
MetaInfoInterface
metaValueExists
(UInt index) const
MetaInfoInterface
MONOISOTOPIC
enum value
ProteinIdentification
NamesOfPeakMassType
ProteinIdentification
static
operator!=
(const ProteinIdentification &rhs) const
ProteinIdentification
OpenMS::MetaInfoInterface::operator!=
(const MetaInfoInterface &rhs) const
MetaInfoInterface
operator=
(const ProteinIdentification &source)
ProteinIdentification
OpenMS::MetaInfoInterface::operator=
(const MetaInfoInterface &rhs)
MetaInfoInterface
operator==
(const ProteinIdentification &rhs) const
ProteinIdentification
OpenMS::MetaInfoInterface::operator==
(const MetaInfoInterface &rhs) const
MetaInfoInterface
PeakMassType
enum name
ProteinIdentification
protein_groups_
ProteinIdentification
protected
protein_hits_
ProteinIdentification
protected
protein_score_type_
ProteinIdentification
protected
protein_significance_threshold_
ProteinIdentification
protected
ProteinIdentification
()
ProteinIdentification
ProteinIdentification
(const ProteinIdentification &source)
ProteinIdentification
removeMetaValue
(const String &name)
MetaInfoInterface
removeMetaValue
(UInt index)
MetaInfoInterface
search_engine_
ProteinIdentification
protected
search_engine_version_
ProteinIdentification
protected
search_parameters_
ProteinIdentification
protected
setDateTime
(const DateTime &date)
ProteinIdentification
setHigherScoreBetter
(bool higher_is_better)
ProteinIdentification
setHits
(const std::vector< ProteinHit > &hits)
ProteinIdentification
setIdentifier
(const String &id)
ProteinIdentification
setMetaValue
(const String &name, const DataValue &value)
MetaInfoInterface
setMetaValue
(UInt index, const DataValue &value)
MetaInfoInterface
setPrimaryMSRunPath
(const StringList &s)
ProteinIdentification
setScoreType
(const String &type)
ProteinIdentification
setSearchEngine
(const String &search_engine)
ProteinIdentification
setSearchEngineVersion
(const String &search_engine_version)
ProteinIdentification
setSearchParameters
(const SearchParameters &search_parameters)
ProteinIdentification
setSignificanceThreshold
(double value)
ProteinIdentification
SIZE_OF_PEAKMASSTYPE
enum value
ProteinIdentification
sort
()
ProteinIdentification
~MetaInfoInterface
()
MetaInfoInterface
~ProteinIdentification
()
ProteinIdentification
virtual
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