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OpenMS
RTSimulation
RTSimulation Member List
This is the complete list of members for
RTSimulation
, including all inherited members.
calculateMT_
(SimTypes::FeatureMapSim &features, std::vector< double > &predicted_retention_times)
RTSimulation
private
check_defaults_
DefaultParamHandler
protected
createExperiment
(SimTypes::MSSimExperiment &experiment)
RTSimulation
DefaultParamHandler
(const String &name)
DefaultParamHandler
DefaultParamHandler
(const DefaultParamHandler &rhs)
DefaultParamHandler
defaults_
DefaultParamHandler
protected
defaultsToParam_
()
DefaultParamHandler
protected
egh_tau_location_
RTSimulation
private
egh_tau_scale_
RTSimulation
private
egh_variance_location_
RTSimulation
private
egh_variance_scale_
RTSimulation
private
error_name_
DefaultParamHandler
protected
getChargeContribution_
(Map< String, double > &q_cterm, Map< String, double > &q_nterm, Map< String, double > &q_aa_basic, Map< String, double > &q_aa_acidic)
RTSimulation
private
getDefaults
() const
DefaultParamHandler
getGradientTime
() const
RTSimulation
getName
() const
DefaultParamHandler
getParameters
() const
DefaultParamHandler
getSubsections
() const
DefaultParamHandler
gradient_max_
RTSimulation
private
gradient_min_
RTSimulation
private
isRTColumnOn
() const
RTSimulation
noRTColumn_
(SimTypes::FeatureMapSim &)
RTSimulation
private
operator=
(const RTSimulation &source)
RTSimulation
OpenMS::DefaultParamHandler::operator=
(const DefaultParamHandler &rhs)
DefaultParamHandler
virtual
operator==
(const DefaultParamHandler &rhs) const
DefaultParamHandler
virtual
param_
DefaultParamHandler
protected
predictContaminantsRT
(SimTypes::FeatureMapSim &)
RTSimulation
predictRT
(SimTypes::FeatureMapSim &features)
RTSimulation
rnd_gen_
RTSimulation
protected
rt_model_file_
RTSimulation
private
rt_sampling_rate_
RTSimulation
private
RTSimulation
()
RTSimulation
RTSimulation
(SimTypes::MutableSimRandomNumberGeneratorPtr random_generator)
RTSimulation
explicit
RTSimulation
(const RTSimulation &source)
RTSimulation
setDefaultParams_
()
RTSimulation
private
setName
(const String &name)
DefaultParamHandler
setParameters
(const Param ¶m)
DefaultParamHandler
smoothRTDistortion_
(SimTypes::MSSimExperiment &experiment)
RTSimulation
private
subsections_
DefaultParamHandler
protected
total_gradient_time_
RTSimulation
private
updateMembers_
() override
RTSimulation
protected
virtual
warn_empty_defaults_
DefaultParamHandler
protected
wrapSVM
(std::vector< AASequence > &peptide_sequences, std::vector< double > &predicted_retention_times)
RTSimulation
~DefaultParamHandler
()
DefaultParamHandler
virtual
~RTSimulation
() override
RTSimulation
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