RawMSSignalSimulation Member List

This is the complete list of members for RawMSSignalSimulation, including all inherited members.

add1DSignal_(Feature &feature, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct)	RawMSSignalSimulation	protected
add2DSignal_(Feature &feature, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct)	RawMSSignalSimulation	protected
addBaseLine_(SimTypes::MSSimExperiment &experiment, SimTypes::SimCoordinateType minimal_mz_measurement_limit)	RawMSSignalSimulation	protected
addDetectorNoise_(SimTypes::MSSimExperiment &experiment)	RawMSSignalSimulation	protected
addShotNoise_(SimTypes::MSSimExperiment &experiment, SimTypes::SimCoordinateType minimal_mz_measurement_limit, SimTypes::SimCoordinateType maximal_mz_measurement_limit)	RawMSSignalSimulation	protected
addWhiteNoise_(SimTypes::MSSimExperiment &experiment)	RawMSSignalSimulation	protected
check_defaults_	DefaultParamHandler	protected
chooseElutionProfile_(EGHModel *const elutionmodel, Feature &feature, const double scale, const double rt_sampling_rate, const SimTypes::MSSimExperiment &experiment)	RawMSSignalSimulation	protected
CMD enum value	ProgressLogger
compressSignals_(SimTypes::MSSimExperiment &experiment)	RawMSSignalSimulation	protected
contaminants_	RawMSSignalSimulation	protected
contaminants_loaded_	RawMSSignalSimulation	protected
createContaminants_(SimTypes::FeatureMapSim &contaminants, SimTypes::MSSimExperiment &exp, SimTypes::MSSimExperiment &exp_ct)	RawMSSignalSimulation	protected
current_logger_	ProgressLogger	mutableprotected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
endProgress() const	ProgressLogger
error_name_	DefaultParamHandler	protected
generateRawSignals(SimTypes::FeatureMapSim &features, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct, SimTypes::FeatureMapSim &contaminants)	RawMSSignalSimulation
getDefaults() const	DefaultParamHandler
getFeatureScaledIntensity_(const SimTypes::SimIntensityType feature_intensity, const SimTypes::SimIntensityType natural_scaling_factor)	RawMSSignalSimulation	protected
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getPeakWidth_(const double mz, const bool is_gaussian) const	RawMSSignalSimulation	protected
getResolution_(const double query_mz, const double resolution, const RESOLUTIONMODEL model) const	RawMSSignalSimulation	protected
getSamplingGrid_(std::vector< SimTypes::SimCoordinateType > &grid, const SimTypes::SimCoordinateType mz_min, const SimTypes::SimCoordinateType mz_max, const Int step_Da)	RawMSSignalSimulation	protected
getSubsections() const	DefaultParamHandler
grid_	RawMSSignalSimulation	protected
GUI enum value	ProgressLogger
IM_ALL enum value	RawMSSignalSimulation	protected
IM_ESI enum value	RawMSSignalSimulation	protected
IM_MALDI enum value	RawMSSignalSimulation	protected
intensity_scale_	RawMSSignalSimulation	protected
intensity_scale_stddev_	RawMSSignalSimulation	protected
IONIZATIONMETHOD enum name	RawMSSignalSimulation	protected
last_invoke_	ProgressLogger	mutableprotected
loadContaminants()	RawMSSignalSimulation
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
mz_error_mean_	RawMSSignalSimulation	protected
mz_error_stddev_	RawMSSignalSimulation	protected
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
operator=(const RawMSSignalSimulation &source)	RawMSSignalSimulation
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
PROFILESHAPE enum name	RawMSSignalSimulation	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
RawMSSignalSimulation()	RawMSSignalSimulation
RawMSSignalSimulation(SimTypes::MutableSimRandomNumberGeneratorPtr rng)	RawMSSignalSimulation	explicit
RawMSSignalSimulation(const RawMSSignalSimulation &source)	RawMSSignalSimulation
recursion_depth_	ProgressLogger	protectedstatic
res_base_	RawMSSignalSimulation	protected
RES_CONSTANT enum value	RawMSSignalSimulation	protected
RES_LINEAR enum value	RawMSSignalSimulation	protected
res_model_	RawMSSignalSimulation	protected
RES_SQRT enum value	RawMSSignalSimulation	protected
RESOLUTIONMODEL enum name	RawMSSignalSimulation	protected
rnd_gen_	RawMSSignalSimulation	protected
RT_GAUSSIAN enum value	RawMSSignalSimulation	protected
RT_RECTANGULAR enum value	RawMSSignalSimulation	protected
samplePeptideModel1D_(const IsotopeModel &iso, const SimTypes::SimCoordinateType mz_start, const SimTypes::SimCoordinateType mz_end, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct, Feature &activeFeature)	RawMSSignalSimulation	protected
samplePeptideModel2D_(const ProductModel< 2 > &pm, const SimTypes::SimCoordinateType mz_start, const SimTypes::SimCoordinateType mz_end, SimTypes::SimCoordinateType rt_start, SimTypes::SimCoordinateType rt_end, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct, Feature &activeFeature)	RawMSSignalSimulation	protected
sampling_points_per_FWHM_	RawMSSignalSimulation	protected
setDefaultParams_()	RawMSSignalSimulation	protected
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
THREADED_RANDOM_NUMBER_POOL_SIZE_	RawMSSignalSimulation	protectedstatic
threaded_random_numbers_	RawMSSignalSimulation	protected
threaded_random_numbers_index_	RawMSSignalSimulation	protected
type_	ProgressLogger	mutableprotected
updateMembers_() override	RawMSSignalSimulation	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProgressLogger()	ProgressLogger
~RawMSSignalSimulation() override	RawMSSignalSimulation