| _MONO_H | SHFeature | privatestatic |
| _MONO_O | SHFeature | privatestatic |
| add_matched_feature(SHFeature *) | SHFeature | |
| add_MS2_info(MS2Info *) | SHFeature | |
| add_MS2_info(std::map< double, std::vector< MS2Info > > *) | SHFeature | |
| addMS2Feature(MS2Feature *in) | SHFeature | |
| alignment_error_down | SHFeature | private |
| alignment_error_up | SHFeature | private |
| apex_peak_intensity | SHFeature | private |
| BackgroundNoise | SHFeature | private |
| charge_state | SHFeature | |
| check_AC(std::string in) | SHFeature | |
| check_AC(std::string in, double T) | SHFeature | |
| check_match_by_id(int) | SHFeature | |
| check_MS2_empty() | SHFeature | |
| compareFeatureMassValuesAtPPMLevel(double, double) | SHFeature | static |
| deriveChargeStates(SHFeature *) | SHFeature | |
| erase_match_list() | SHFeature | |
| feature_ID | SHFeature | |
| feature_match_status | SHFeature | private |
| featureExtraInformation | SHFeature | private |
| find_match_by_id(int ID) | SHFeature | |
| get_AC() | SHFeature | |
| get_AC(double T) | SHFeature | |
| get_alignment_error_down() | SHFeature | |
| get_alignment_error_up() | SHFeature | |
| get_apex_peak_intensity() | SHFeature | |
| get_best_MS2_SCAN() | SHFeature | |
| get_best_MS2_SCAN(double) | SHFeature | |
| get_charge_state() | SHFeature | |
| get_feature(int) | SHFeature | |
| get_feature_ID() | SHFeature | |
| get_feature_match_status() | SHFeature | |
| get_FEATURE_PI() | SHFeature | |
| get_feature_profile() | SHFeature | |
| get_MASTER_ID() | SHFeature | |
| get_match_list() | SHFeature | |
| get_match_list_end() | SHFeature | |
| get_match_list_REFERENCE() | SHFeature | |
| get_match_list_start() | SHFeature | |
| get_MATCHED_peak_area() | SHFeature | |
| get_matching_nb() | SHFeature | |
| get_MOD_SQ() | SHFeature | |
| get_MOD_SQ(double T) | SHFeature | |
| get_Molecular_Mass() | SHFeature | |
| get_MONO_H() | SHFeature | static |
| get_MS2_info() | SHFeature | |
| get_MS2_info(double) | SHFeature | |
| get_MS2_scan() | SHFeature | |
| get_MS2_scan(double T) | SHFeature | |
| get_MS2_SCAN_LIST() | SHFeature | |
| get_MS2_SCAN_LIST_END() | SHFeature | |
| get_MS2_SCAN_LIST_START() | SHFeature | |
| get_MS2_SCAN_MAP() | SHFeature | |
| get_MS2_SCANS_END() | SHFeature | |
| get_MS2_SCANS_SIZE() | SHFeature | |
| get_MS2_SCANS_START() | SHFeature | |
| get_MS2_TYPE_TAG() | SHFeature | |
| get_MS2_TYPE_TAG(double T) | SHFeature | |
| get_MZ() | SHFeature | |
| get_MZ_END() | SHFeature | |
| get_MZ_START() | SHFeature | |
| get_nb_common_match() | SHFeature | |
| get_peak_area() | SHFeature | |
| get_peak_area(int) | SHFeature | |
| get_peak_score() | SHFeature | |
| get_pep_prob() | SHFeature | |
| get_pep_prob(double T) | SHFeature | |
| get_profile_Molecular_Mass() | SHFeature | |
| get_profile_retention_time() | SHFeature | |
| get_raw_MZ() | SHFeature | |
| get_raw_retention_time_apex() | SHFeature | |
| get_replicate_intensity_sum() | SHFeature | |
| get_replicate_match_nb() | SHFeature | |
| get_retention_time() | SHFeature | |
| get_retention_time_END() | SHFeature | |
| get_retention_time_START() | SHFeature | |
| get_scan_end() | SHFeature | |
| get_scan_number() | SHFeature | |
| get_scan_start() | SHFeature | |
| get_SCORE_HOLDER() | SHFeature | |
| get_spectrum_ID() | SHFeature | |
| get_SQ() | SHFeature | |
| get_SQ(double T) | SHFeature | |
| get_THEO_MZ() | SHFeature | |
| get_THEO_MZ(double T) | SHFeature | |
| get_TOTAL_SQ() | SHFeature | |
| get_TOTAL_SQ(double T) | SHFeature | |
| getBackgroundNoiseLevel() | SHFeature | |
| getFeatureExtraInformation() | SHFeature | |
| getFeatureMassErrorAtPPMLevel(double) | SHFeature | static |
| getLCelutionProfile() | SHFeature | |
| getMS2Feature() | SHFeature | |
| getSignalToNoise() | SHFeature | |
| LCprofile | SHFeature | private |
| MASTER_ID | SHFeature | private |
| matched_feature_list | SHFeature | private |
| MONO_MZ | SHFeature | |
| MONO_MZ_END | SHFeature | private |
| MONO_MZ_ORIGINAL | SHFeature | private |
| MONO_MZ_START | SHFeature | private |
| MS2_SCANS | SHFeature | private |
| MS2TraceFeature | SHFeature | private |
| normalize_peak_area_by_factor(double factor) | SHFeature | |
| operator=(const SHFeature &) | SHFeature | |
| operator==(const SHFeature &) | SHFeature | |
| PEAK_SCORE | SHFeature | private |
| PI | SHFeature | private |
| removeAllMS2Information() | SHFeature | |
| removeMS2Feature() | SHFeature | |
| scan_apex | SHFeature | private |
| scan_end | SHFeature | private |
| scan_start | SHFeature | private |
| SCORE_HOLDER | SHFeature | private |
| set_alignment_error_down(double in) | SHFeature | |
| set_alignment_error_up(double in) | SHFeature | |
| set_apex_peak_intensity(double in) | SHFeature | |
| set_charge_state(int in) | SHFeature | |
| set_feature_ID(int in) | SHFeature | |
| set_feature_match_status(bool in) | SHFeature | |
| set_FEATURE_PI(double in) | SHFeature | |
| set_MASTER_ID(int in) | SHFeature | |
| set_MZ(double in) | SHFeature | |
| set_MZ_END(double in) | SHFeature | |
| set_MZ_START(double in) | SHFeature | |
| set_peak_area(float in) | SHFeature | |
| set_peak_score(double in) | SHFeature | |
| set_raw_MZ(double in) | SHFeature | |
| set_raw_retention_time_apex(double in) | SHFeature | |
| set_retention_time(double in) | SHFeature | |
| set_retention_time_END(double in) | SHFeature | |
| set_retention_time_START(double in) | SHFeature | |
| set_scan_end(int in) | SHFeature | |
| set_scan_number(int in) | SHFeature | |
| set_scan_start(int in) | SHFeature | |
| set_SCORE_HOLDER(double in) | SHFeature | |
| set_spectrum_ID(int in) | SHFeature | |
| setBackgroundNoiseLevel(double in) | SHFeature | |
| setFeatureExtraInformation(std::string in) | SHFeature | |
| setLCelutionProfile(FeatureLCProfile *in) | SHFeature | |
| setSignalToNoise(double in) | SHFeature | |
| SHFeature(const SHFeature &) | SHFeature | |
| SHFeature(const SHFeature *) | SHFeature | |
| SHFeature(double, double, int, int, int, int, float, float, float) | SHFeature | |
| SHFeature(float, int, int) | SHFeature | |
| SHFeature(MS2Feature *) | SHFeature | |
| SHFeature() | SHFeature | |
| show_info() | SHFeature | |
| showMS2consensSpectraInfo() | SHFeature | |
| SignalToNoise | SHFeature | private |
| spectrum_ID | SHFeature | private |
| total_peak_area | SHFeature | private |
| TR | SHFeature | |
| TR_APEX | SHFeature | private |
| TR_END | SHFeature | |
| TR_START | SHFeature | |
| ~SHFeature() | SHFeature | |
1.8.14