OpenMS  2.4.0
SILACLabeler Member List

This is the complete list of members for SILACLabeler, including all inherited members.

addModificationToPeptideHit_(Feature &feature, const String &modification) constSILACLabelerprotected
applyLabelToProteinHit_(SimTypes::FeatureMapSim &protein_hit, const String &arginine_label, const String &lysine_label) constSILACLabelerprotected
BaseLabeler()BaseLabeler
canModificationBeApplied_(const String &modification_id, const String &aa) constSILACLabelerprotected
channel_description_BaseLabelerprotected
check_defaults_DefaultParamHandlerprotected
consensus_BaseLabelerprotected
create()SILACLabelerinlinestatic
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getChannelIntensityName(const Size channel_index) constBaseLabeler
getConsensus()BaseLabeler
getDefaultParameters() constBaseLabelervirtual
getDefaults() constDefaultParamHandler
getDescription() constBaseLabeler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getProductName()SILACLabelerinlinestatic
getSubsections() constDefaultParamHandler
getUnmodifiedSequence_(const Feature &feature, const String &arginine_label, const String &lysine_label) constSILACLabelerprotected
heavy_channel_arginine_label_SILACLabelerprotected
heavy_channel_lysine_label_SILACLabelerprotected
HEAVY_FEATURE_MAPID_SILACLabelerprivatestatic
LIGHT_FEATURE_MAPID_SILACLabelerprivatestatic
medium_channel_arginine_label_SILACLabelerprotected
medium_channel_lysine_label_SILACLabelerprotected
MEDIUM_FEATURE_MAPID_SILACLabelerprivatestatic
mergeAllChannelFeatures_(Feature &heavy_channel_feature, const String &unmodified_feature_sequence, Map< String, Feature > &light_channel_feature_index, Map< String, Feature > &medium_channel_feature_index) constSILACLabelerprotected
mergeFeatures_(Feature &labeled_channel_feature, const String &unmodified_sequence, Map< String, Feature > &unlabeled_features_index, Int index_channel_id, Int labeled_channel_id) constSILACLabelerprotected
mergeProteinAccessions_(Feature &target, const Feature &source) constBaseLabelerprotected
mergeProteinIdentificationsMaps_(const SimTypes::FeatureMapSimVector &maps)BaseLabelerprotected
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
postDetectabilityHook(SimTypes::FeatureMapSimVector &) overrideSILACLabelervirtual
postDigestHook(SimTypes::FeatureMapSimVector &) overrideSILACLabelervirtual
postIonizationHook(SimTypes::FeatureMapSimVector &) overrideSILACLabelervirtual
postRawMSHook(SimTypes::FeatureMapSimVector &) overrideSILACLabelervirtual
postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &) overrideSILACLabelervirtual
postRTHook(SimTypes::FeatureMapSimVector &) overrideSILACLabelervirtual
preCheck(Param &) const overrideSILACLabelervirtual
recomputeConsensus_(const SimTypes::FeatureMapSim &simulated_features)BaseLabelerprotected
registerChildren()BaseLabelerstatic
rng_BaseLabelerprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setRnd(SimTypes::MutableSimRandomNumberGeneratorPtr rng)BaseLabelervirtual
setUpHook(SimTypes::FeatureMapSimVector &) overrideSILACLabelervirtual
SILACLabeler()SILACLabeler
subsections_DefaultParamHandlerprotected
updateMembers_() overrideSILACLabelerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
~BaseLabeler() overrideBaseLabeler
~DefaultParamHandler()DefaultParamHandlervirtual
~SILACLabeler() overrideSILACLabeler