a_ | TOFCalibration | private |
applyTOFConversion_(PeakMap &calib_spectra) | TOFCalibration | private |
averageCoefficients_() | TOFCalibration | private |
averageErrors_() | TOFCalibration | private |
b_ | TOFCalibration | private |
c_ | TOFCalibration | private |
calculateCalibCoeffs_(PeakMap &calib_peaks_ft) | TOFCalibration | private |
calib_masses_ | TOFCalibration | private |
calib_peaks_ft_ | TOFCalibration | private |
calibrate(PeakMap &calib_spectra, PeakMap &exp, std::vector< double > &exp_masses) | TOFCalibration | |
check_defaults_ | DefaultParamHandler | protected |
CMD enum value | ProgressLogger | |
coeff_quad_fit_ | TOFCalibration | private |
current_logger_ | ProgressLogger | mutableprotected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
endProgress() const | ProgressLogger | |
error_medians_ | TOFCalibration | private |
error_name_ | DefaultParamHandler | protected |
errors_ | TOFCalibration | private |
exp_masses_ | TOFCalibration | private |
getDefaults() const | DefaultParamHandler | |
getLogType() const | ProgressLogger | |
getML1s() const | TOFCalibration | inline |
getML2s() const | TOFCalibration | inline |
getML3s() const | TOFCalibration | inline |
getMonoisotopicPeaks_(PeakMap &calib_peaks, std::vector< std::vector< unsigned int > > &monoiso_peaks) | TOFCalibration | private |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
matchMasses_(PeakMap &calib_peaks, std::vector< std::vector< unsigned int > > &monoiso_peaks, std::vector< unsigned int > &obs_masses, std::vector< double > &exp_masses, unsigned int idx) | TOFCalibration | private |
ml1s_ | TOFCalibration | private |
ml2s_ | TOFCalibration | private |
ml3s_ | TOFCalibration | private |
mQ_(double ft, unsigned int spec) | TOFCalibration | inlineprivate |
mQAv_(double ft) | TOFCalibration | inlineprivate |
nextProgress() const | ProgressLogger | |
NONE enum value | ProgressLogger | |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
pickAndCalibrate(PeakMap &calib_spectra, PeakMap &exp, std::vector< double > &exp_masses) | TOFCalibration | |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
recursion_depth_ | ProgressLogger | protectedstatic |
setLogType(LogType type) const | ProgressLogger | |
setML1s(const std::vector< double > &ml1s) | TOFCalibration | inline |
setML2s(const std::vector< double > &ml2s) | TOFCalibration | inline |
setML3s(const std::vector< double > &ml3s) | TOFCalibration | inline |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | protected |
TOFCalibration() | TOFCalibration | |
type_ | ProgressLogger | mutableprotected |
updateMembers_() | DefaultParamHandler | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~ProgressLogger() | ProgressLogger | |
~TOFCalibration() override | TOFCalibration | |