TargetedSpectraExtractor Member List

This is the complete list of members for TargetedSpectraExtractor, including all inherited members.

annotateSpectra(const std::vector< MSSpectrum > &spectra, const TargetedExperiment &targeted_exp, std::vector< MSSpectrum > &annotated_spectra, FeatureMap &features, const bool compute_features=true) const	TargetedSpectraExtractor
annotateSpectra(const std::vector< MSSpectrum > &spectra, const TargetedExperiment &targeted_exp, std::vector< MSSpectrum > &annotated_spectra) const	TargetedSpectraExtractor
check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
extractSpectra(const MSExperiment &experiment, const TargetedExperiment &targeted_exp, std::vector< MSSpectrum > &extracted_spectra, FeatureMap &extracted_features, const bool compute_features=true) const	TargetedSpectraExtractor
extractSpectra(const MSExperiment &experiment, const TargetedExperiment &targeted_exp, std::vector< MSSpectrum > &extracted_spectra) const	TargetedSpectraExtractor
fwhm_threshold_	TargetedSpectraExtractor	private
fwhm_weight_	TargetedSpectraExtractor	private
getDefaultParameters(Param &params) const	TargetedSpectraExtractor
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
matchSpectrum(const MSSpectrum &input_spectrum, const Comparator &cmp, std::vector< Match > &matches)	TargetedSpectraExtractor
min_match_score_	TargetedSpectraExtractor	private
min_select_score_	TargetedSpectraExtractor	private
mz_tolerance_	TargetedSpectraExtractor	private
mz_unit_is_Da_	TargetedSpectraExtractor	private
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
peak_height_max_	TargetedSpectraExtractor	private
peak_height_min_	TargetedSpectraExtractor	private
pickSpectrum(const MSSpectrum &spectrum, MSSpectrum &picked_spectrum) const	TargetedSpectraExtractor
rt_window_	TargetedSpectraExtractor	private
scoreSpectra(const std::vector< MSSpectrum > &annotated_spectra, const std::vector< MSSpectrum > &picked_spectra, FeatureMap &features, std::vector< MSSpectrum > &scored_spectra, const bool compute_features=true) const	TargetedSpectraExtractor
scoreSpectra(const std::vector< MSSpectrum > &annotated_spectra, const std::vector< MSSpectrum > &picked_spectra, std::vector< MSSpectrum > &scored_spectra) const	TargetedSpectraExtractor
selectSpectra(const std::vector< MSSpectrum > &scored_spectra, const FeatureMap &features, std::vector< MSSpectrum > &selected_spectra, FeatureMap &selected_features, const bool compute_features=true) const	TargetedSpectraExtractor
selectSpectra(const std::vector< MSSpectrum > &scored_spectra, std::vector< MSSpectrum > &selected_spectra) const	TargetedSpectraExtractor
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
snr_weight_	TargetedSpectraExtractor	private
subsections_	DefaultParamHandler	protected
targetedMatching(const std::vector< MSSpectrum > &spectra, const Comparator &cmp, FeatureMap &features)	TargetedSpectraExtractor
TargetedSpectraExtractor()	TargetedSpectraExtractor
tic_weight_	TargetedSpectraExtractor	private
top_matches_to_report_	TargetedSpectraExtractor	private
untargetedMatching(const std::vector< MSSpectrum > &spectra, const Comparator &cmp, FeatureMap &features)	TargetedSpectraExtractor
updateMembers_()	TargetedSpectraExtractor	protectedvirtual
use_gauss_	TargetedSpectraExtractor	private
warn_empty_defaults_	DefaultParamHandler	protected
~DefaultParamHandler()	DefaultParamHandler	virtual
~TargetedSpectraExtractor()=default	TargetedSpectraExtractor	virtual