This is the complete list of members for TheoreticalSpectrumGenerator, including all inherited members.

a_intensity_	TheoreticalSpectrumGenerator	protected
add_a_ions_	TheoreticalSpectrumGenerator	protected
add_abundant_immonium_ions_	TheoreticalSpectrumGenerator	protected
add_all_precursor_charges_	TheoreticalSpectrumGenerator	protected
add_b_ions_	TheoreticalSpectrumGenerator	protected
add_c_ions_	TheoreticalSpectrumGenerator	protected
add_first_prefix_ion_	TheoreticalSpectrumGenerator	protected
add_isotopes_	TheoreticalSpectrumGenerator	protected
add_losses_	TheoreticalSpectrumGenerator	protected
add_metainfo_	TheoreticalSpectrumGenerator	protected
add_precursor_peaks_	TheoreticalSpectrumGenerator	protected
add_x_ions_	TheoreticalSpectrumGenerator	protected
add_y_ions_	TheoreticalSpectrumGenerator	protected
add_z_ions_	TheoreticalSpectrumGenerator	protected
addAbundantImmoniumIons_(PeakSpectrum &spec, const AASequence &peptide, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges) const	TheoreticalSpectrumGenerator	protected
addIsotopeCluster_(PeakSpectrum &spectrum, const AASequence &ion, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges, Residue::ResidueType res_type, Int charge, double intensity) const	TheoreticalSpectrumGenerator	protected
addLosses_(PeakSpectrum &spectrum, const AASequence &ion, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges, double intensity, Residue::ResidueType res_type, int charge) const	TheoreticalSpectrumGenerator	protected
addPeaks_(PeakSpectrum &spectrum, const AASequence &peptide, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges, Residue::ResidueType res_type, Int charge=1) const	TheoreticalSpectrumGenerator	protectedvirtual
addPrecursorPeaks_(PeakSpectrum &spec, const AASequence &peptide, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges, Int charge=1) const	TheoreticalSpectrumGenerator	protectedvirtual
b_intensity_	TheoreticalSpectrumGenerator	protected
c_intensity_	TheoreticalSpectrumGenerator	protected
check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSpectrum(PeakSpectrum &spec, const AASequence &peptide, Int min_charge, Int max_charge) const	TheoreticalSpectrumGenerator	virtual
getSubsections() const	DefaultParamHandler
max_isotope_	TheoreticalSpectrumGenerator	protected
operator=(const TheoreticalSpectrumGenerator &tsg)	TheoreticalSpectrumGenerator
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
pre_int_	TheoreticalSpectrumGenerator	protected
pre_int_H2O_	TheoreticalSpectrumGenerator	protected
pre_int_NH3_	TheoreticalSpectrumGenerator	protected
rel_loss_intensity_	TheoreticalSpectrumGenerator	protected
residueTypeToIonLetter_(Residue::ResidueType res_type) const	TheoreticalSpectrumGenerator	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
subsections_	DefaultParamHandler	protected
TheoreticalSpectrumGenerator()	TheoreticalSpectrumGenerator
TheoreticalSpectrumGenerator(const TheoreticalSpectrumGenerator &source)	TheoreticalSpectrumGenerator
updateMembers_() override	TheoreticalSpectrumGenerator	virtual
warn_empty_defaults_	DefaultParamHandler	protected
x_intensity_	TheoreticalSpectrumGenerator	protected
y_intensity_	TheoreticalSpectrumGenerator	protected
z_intensity_	TheoreticalSpectrumGenerator	protected
~DefaultParamHandler()	DefaultParamHandler	virtual
~TheoreticalSpectrumGenerator() override	TheoreticalSpectrumGenerator