This is the complete list of members for RNPxlSearch::RNPxlFragmentIonGenerator, including all inherited members.

addMS2MarkerIons(const vector< FragmentAdductDefinition_ > &marker_ions, PeakSpectrum &spectrum, PeakSpectrum::IntegerDataArray &spectrum_charge, PeakSpectrum::StringDataArray &spectrum_annotation)	RNPxlSearch::RNPxlFragmentIonGenerator	static
addPrecursorWithCompleteRNA_(const double fixed_and_variable_modified_peptide_weight, const String &precursor_rna_adduct, const double precursor_rna_weight, const int charge, PeakSpectrum &partial_loss_spectrum, MSSpectrum::IntegerDataArray &partial_loss_spectrum_charge, MSSpectrum::StringDataArray &partial_loss_spectrum_annotation)	RNPxlSearch::RNPxlFragmentIonGenerator	static
addShiftedImmoniumIons(const String &unmodified_sequence, const String &fragment_shift_name, const double fragment_shift_mass, PeakSpectrum &partial_loss_spectrum, PeakSpectrum::IntegerDataArray &partial_loss_spectrum_charge, PeakSpectrum::StringDataArray &partial_loss_spectrum_annotation)	RNPxlSearch::RNPxlFragmentIonGenerator	static
addSpecialLysImmonumIons(const String &unmodified_sequence, PeakSpectrum &spectrum, PeakSpectrum::IntegerDataArray &spectrum_charge, PeakSpectrum::StringDataArray &spectrum_annotation)	RNPxlSearch::RNPxlFragmentIonGenerator	static
generatePartialLossSpectrum(const String &unmodified_sequence, const AASequence &fixed_and_variable_modified_peptide, const double &fixed_and_variable_modified_peptide_weight, const String &precursor_rna_adduct, const double &precursor_rna_weight, const int &precursor_charge, const vector< FragmentAdductDefinition_ > &partial_loss_modification, const TheoreticalSpectrumGenerator &partial_loss_spectrum_generator, PeakSpectrum &partial_loss_spectrum)	RNPxlSearch::RNPxlFragmentIonGenerator	static