openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Hannes Roest $
// $Authors: Hannes Roest, Witold Wolski $
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#pragma once

#include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>

#include <OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h>
#include <boost/shared_ptr.hpp>
#include <string>
#include <vector>

namespace OpenSwath
{

  class OPENSWATHALGO_DLLAPI ISpectrumAccess
  {
public:
    virtual ~ISpectrumAccess();

    virtual boost::shared_ptr<ISpectrumAccess> lightClone() const = 0;

    virtual SpectrumPtr getSpectrumById(int id) = 0;
    virtual std::vector<std::size_t> getSpectraByRT(double RT, double deltaRT) const = 0;
    virtual size_t getNrSpectra() const = 0;
    virtual SpectrumMeta getSpectrumMetaById(int id) const = 0;

    virtual ChromatogramPtr getChromatogramById(int id) = 0;
    //virtual std::vector<std::size_t> getChromatogramByPrecursorMZ(double mz,
    //    double deltaMZ) const = 0;
    virtual std::size_t getNrChromatograms() const = 0;
    virtual std::string getChromatogramNativeID(int id) const = 0;
  };

  typedef boost::shared_ptr<ISpectrumAccess> SpectrumAccessPtr;
}