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OpenMS
FORMAT
KroenikFile.h
Go to the documentation of this file.
1
// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
11
// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Chris Bielow $
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// $Authors: Chris Bielow $
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/CONCEPT/Exception.h
>
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#include <
OpenMS/KERNEL/FeatureMap.h
>
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namespace
OpenMS
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{
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class
String;
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62
class
OPENMS_DLLAPI
KroenikFile
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{
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public
:
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KroenikFile
();
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virtual
~
KroenikFile
();
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void
load(
const
String
& filename,
FeatureMap
& feature_map);
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template
<
typename
SpectrumType>
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void
store
(
const
String
& filename,
const
SpectrumType
& spectrum)
const
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{
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std::cerr <<
"Store() for KroenikFile not implemented. Filename was: "
<< filename <<
", spec of size "
<< spectrum.size() <<
"\n"
;
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throw
Exception::NotImplemented
(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION);
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}
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};
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}
// namespace OpenMS
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Exception.h
OpenMS::FeatureMap
A container for features.
Definition:
FeatureMap.h:95
FeatureMap.h
OpenMS::Exception::NotImplemented
Not implemented exception.
Definition:
Exception.h:436
OpenMS::String
A more convenient string class.
Definition:
String.h:58
OpenMS::KroenikFile::store
void store(const String &filename, const SpectrumType &spectrum) const
Stores a featureXML as a Kroenik file.
Definition:
KroenikFile.h:88
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
OpenMS::MSSpectrum
The representation of a 1D spectrum.
Definition:
MSSpectrum.h:67
OpenMS::KroenikFile
File adapter for Kroenik (HardKloer sibling) files.
Definition:
KroenikFile.h:62
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