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OpenMS
FORMAT
TraMLFile.h
Go to the documentation of this file.
1
// --------------------------------------------------------------------------
2
// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
9
// notice, this list of conditions and the following disclaimer.
10
// * Redistributions in binary form must reproduce the above copyright
11
// notice, this list of conditions and the following disclaimer in the
12
// documentation and/or other materials provided with the distribution.
13
// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
15
// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
18
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29
//
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// --------------------------------------------------------------------------
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// $Maintainer: Timo Sachsenberg $
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// $Authors: Andreas Bertsch$
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/FORMAT/XMLFile.h
>
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#include <
OpenMS/CONCEPT/ProgressLogger.h
>
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#include <
OpenMS/DATASTRUCTURES/ListUtils.h
>
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namespace
OpenMS
42
{
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class
Identification;
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class
TargetedExperiment;
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63
class
OPENMS_DLLAPI
TraMLFile
:
64
public
Internal::XMLFile
,
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public
ProgressLogger
66
{
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public
:
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TraMLFile
();
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~
TraMLFile
()
override
;
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79
void
load(
const
String
& filename,
TargetedExperiment
&
id
);
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86
void
store(
const
String
& filename,
const
TargetedExperiment
&
id
)
const
;
87
97
bool
isSemanticallyValid(
const
String
& filename,
StringList
& errors,
StringList
& warnings);
98
99
private
:
100
101
};
102
103
}
// namespace OpenMS
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105
XMLFile.h
OpenMS::StringList
std::vector< String > StringList
Vector of String.
Definition:
ListUtils.h:70
OpenMS::TraMLFile
File adapter for HUPO PSI TraML files.
Definition:
TraMLFile.h:63
OpenMS::ProgressLogger
Base class for all classes that want to report their progress.
Definition:
ProgressLogger.h:54
ListUtils.h
ProgressLogger.h
OpenMS::String
A more convenient string class.
Definition:
String.h:58
OpenMS::Internal::XMLFile
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition:
XMLFile.h:48
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
OpenMS::TargetedExperiment
A description of a targeted experiment containing precursor and production ions.
Definition:
TargetedExperiment.h:64
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