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OpenMS
METADATA
Digestion.h
Go to the documentation of this file.
1
// --------------------------------------------------------------------------
2
// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
4
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5
// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
9
// notice, this list of conditions and the following disclaimer.
10
// * Redistributions in binary form must reproduce the above copyright
11
// notice, this list of conditions and the following disclaimer in the
12
// documentation and/or other materials provided with the distribution.
13
// * Neither the name of any author or any participating institution
14
// may be used to endorse or promote products derived from this software
15
// without specific prior written permission.
16
// For a full list of authors, refer to the file AUTHORS.
17
// --------------------------------------------------------------------------
18
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29
//
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// --------------------------------------------------------------------------
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// $Maintainer: Timo Sachsenberg $
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// $Authors: Marc Sturm $
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// --------------------------------------------------------------------------
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35
#pragma once
36
37
#include <
OpenMS/DATASTRUCTURES/String.h
>
38
#include <
OpenMS/METADATA/SampleTreatment.h
>
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namespace
OpenMS
41
{
49
class
OPENMS_DLLAPI
Digestion
:
50
public
SampleTreatment
51
{
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public
:
54
Digestion
();
56
Digestion
(
const
Digestion
&) =
default
;
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Digestion
(
Digestion
&&) =
default
;
60
~
Digestion
()
override
;
61
63
Digestion
& operator=(
const
Digestion
&) =
default
;
65
Digestion
& operator=(
Digestion
&&) & =
default
;
66
73
bool
operator==
(
const
SampleTreatment
& rhs)
const override
;
74
76
SampleTreatment
* clone()
const override
;
77
79
const
String
& getEnzyme()
const
;
81
void
setEnzyme(
const
String
& enzyme);
82
84
double
getDigestionTime()
const
;
86
void
setDigestionTime(
double
digestion_time);
87
89
double
getTemperature()
const
;
91
void
setTemperature(
double
temperature);
92
94
double
getPh()
const
;
96
void
setPh(
double
ph);
97
98
protected
:
99
String
enzyme_
;
100
double
digestion_time_
;
101
double
temperature_
;
102
double
ph_
;
103
};
104
}
// namespace OpenMS
105
OpenMS::Digestion::temperature_
double temperature_
Definition:
Digestion.h:101
KDTree::operator==
bool operator==(_Iterator< _Val, _Ref, _Ptr > const &, _Iterator< _Val, _Ref, _Ptr > const &)
Definition:
KDTree.h:806
OpenMS::SampleTreatment
Base class for sample treatments (Digestion, Modification, Tagging, ...)
Definition:
SampleTreatment.h:51
OpenMS::Digestion::digestion_time_
double digestion_time_
Definition:
Digestion.h:100
SampleTreatment.h
OpenMS::Digestion::enzyme_
String enzyme_
Definition:
Digestion.h:99
OpenMS::Digestion
Meta information about digestion of a sample.
Definition:
Digestion.h:49
OpenMS::Digestion::ph_
double ph_
Definition:
Digestion.h:102
OpenMS::String
A more convenient string class.
Definition:
String.h:58
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
String.h
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