This is the complete list of members for OpenSwathCalibrationWorkflow, including all inherited members.

addChromatograms(MSChromatogram &base_chrom, const MSChromatogram &newchrom)	OpenSwathCalibrationWorkflow	static
CMD enum value	ProgressLogger
current_logger_	ProgressLogger	mutableprotected
doDataNormalization_(const OpenSwath::LightTargetedExperiment &transition_exp_, const std::vector< OpenMS::MSChromatogram > &chromatograms, TransformationDescription &im_trafo, std::vector< OpenSwath::SwathMap > &swath_maps, double min_rsq, double min_coverage, const Param &default_ffparam, const Param &irt_detection_param, const Param &calibration_param)	OpenSwathCalibrationWorkflow
endProgress() const	ProgressLogger
getLogType() const	ProgressLogger
GUI enum value	ProgressLogger
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
ms1_map_	OpenSwathWorkflowBase	protected
MS1Extraction_(const OpenSwath::SpectrumAccessPtr ms1_map, const std::vector< OpenSwath::SwathMap > &swath_maps, std::vector< MSChromatogram > &ms1_chromatograms, Interfaces::IMSDataConsumer *chromConsumer, const ChromExtractParams &cp, const OpenSwath::LightTargetedExperiment &transition_exp, const TransformationDescription &trafo_inverse, bool ms1only=false, int ms1_isotopes=0)	OpenSwathWorkflowBase	protected
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
OpenSwathCalibrationWorkflow()	OpenSwathCalibrationWorkflow	inline
OpenSwathCalibrationWorkflow(bool use_ms1_traces)	OpenSwathCalibrationWorkflow	inlineexplicit
OpenSwathWorkflowBase()	OpenSwathWorkflowBase	inlineprotected
OpenSwathWorkflowBase(bool use_ms1_traces, bool use_ms1_ion_mobility, bool prm, int threads_outer_loop)	OpenSwathWorkflowBase	inlineprotected
operator=(const ProgressLogger &other)	ProgressLogger
performRTNormalization(const OpenSwath::LightTargetedExperiment &irt_transitions, std::vector< OpenSwath::SwathMap > &swath_maps, TransformationDescription &im_trafo, double min_rsq, double min_coverage, const Param &feature_finder_param, const ChromExtractParams &cp_irt, const Param &irt_detection_param, const Param &calibration_param, const String &irt_mzml_out, Size debug_level, bool sonar=false, bool load_into_memory=false)	OpenSwathCalibrationWorkflow
prepareExtractionCoordinates_(std::vector< OpenSwath::ChromatogramPtr > &chrom_list, std::vector< ChromatogramExtractorAlgorithm::ExtractionCoordinates > &coordinates, const OpenSwath::LightTargetedExperiment &transition_exp_used, const TransformationDescription trafo_inverse, const ChromExtractParams &cp, const bool ms1=false, const int ms1_isotopes=-1) const	OpenSwathWorkflowBase	protected
prm_	OpenSwathWorkflowBase	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
setLogType(LogType type) const	ProgressLogger
setProgress(SignedSize value) const	ProgressLogger
simpleExtractChromatograms_(const std::vector< OpenSwath::SwathMap > &swath_maps, const OpenSwath::LightTargetedExperiment &irt_transitions, std::vector< OpenMS::MSChromatogram > &chromatograms, const TransformationDescription &trafo, const ChromExtractParams &cp, bool sonar, bool load_into_memory)	OpenSwathCalibrationWorkflow
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
threads_outer_loop_	OpenSwathWorkflowBase	protected
type_	ProgressLogger	mutableprotected
use_ms1_ion_mobility_	OpenSwathWorkflowBase	protected
use_ms1_traces_	OpenSwathWorkflowBase	protected
~ProgressLogger()	ProgressLogger