SimpleTSGXLMS Member List

This is the complete list of members for SimpleTSGXLMS, including all inherited members.

add_a_ions_	SimpleTSGXLMS	protected
add_abundant_immonium_ions_	SimpleTSGXLMS	protected
add_b_ions_	SimpleTSGXLMS	protected
add_c_ions_	SimpleTSGXLMS	protected
add_charges_	SimpleTSGXLMS	protected
add_first_prefix_ion_	SimpleTSGXLMS	protected
add_isotopes_	SimpleTSGXLMS	protected
add_k_linked_ions_	SimpleTSGXLMS	protected
add_losses_	SimpleTSGXLMS	protected
add_precursor_peaks_	SimpleTSGXLMS	protected
add_x_ions_	SimpleTSGXLMS	protected
add_y_ions_	SimpleTSGXLMS	protected
add_z_ions_	SimpleTSGXLMS	protected
addKLinkedIonPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, int charge) const	SimpleTSGXLMS	protectedvirtual
addLinearPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, int charge=1, Size link_pos_2=0) const	SimpleTSGXLMS	protectedvirtual
addLosses_(std::vector< SimplePeak > &spectrum, double mono_weight, int charge, LossIndex &losses) const	SimpleTSGXLMS	protectedvirtual
addPrecursorPeaks_(std::vector< SimplePeak > &spectrum, double precursor_mass, int charge) const	SimpleTSGXLMS	protectedvirtual
addXLinkIonPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, int charge, Size link_pos_2=0) const	SimpleTSGXLMS	protectedvirtual
addXLinkIonPeaks_(std::vector< SimplePeak > &spectrum, OPXLDataStructs::ProteinProteinCrossLink &crosslink, bool frag_alpha, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, LossIndex &losses_peptide2, int charge) const	SimpleTSGXLMS	protectedvirtual
check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getBackwardLosses_(AASequence &peptide) const	SimpleTSGXLMS	protected
getDefaults() const	DefaultParamHandler
getForwardLosses_(AASequence &peptide) const	SimpleTSGXLMS	protected
getLinearIonSpectrum(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, int charge=1, Size link_pos_2=0) const	SimpleTSGXLMS	virtual
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
getXLinkIonSpectrum(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, int mincharge, int maxcharge, Size link_pos_2=0) const	SimpleTSGXLMS	virtual
getXLinkIonSpectrum(std::vector< SimplePeak > &spectrum, OPXLDataStructs::ProteinProteinCrossLink &crosslink, bool frag_alpha, int mincharge, int maxcharge) const	SimpleTSGXLMS	virtual
loss_db_	SimpleTSGXLMS	protected
loss_H2O_	SimpleTSGXLMS	protected
loss_NH3_	SimpleTSGXLMS	protected
max_isotope_	SimpleTSGXLMS	protected
operator=(const SimpleTSGXLMS &tsg)	SimpleTSGXLMS
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
pre_int_	SimpleTSGXLMS	protected
pre_int_H2O_	SimpleTSGXLMS	protected
pre_int_NH3_	SimpleTSGXLMS	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
SimpleTSGXLMS()	SimpleTSGXLMS
SimpleTSGXLMS(const SimpleTSGXLMS &source)	SimpleTSGXLMS
subsections_	DefaultParamHandler	protected
updateMembers_() override	SimpleTSGXLMS	virtual
warn_empty_defaults_	DefaultParamHandler	protected
~DefaultParamHandler()	DefaultParamHandler	virtual
~SimpleTSGXLMS() override	SimpleTSGXLMS