| a_ | TOFCalibration | private |
| applyTOFConversion_(PeakMap &calib_spectra) | TOFCalibration | private |
| averageCoefficients_() | TOFCalibration | private |
| averageErrors_() | TOFCalibration | private |
| b_ | TOFCalibration | private |
| c_ | TOFCalibration | private |
| calculateCalibCoeffs_(PeakMap &calib_peaks_ft) | TOFCalibration | private |
| calib_masses_ | TOFCalibration | private |
| calib_peaks_ft_ | TOFCalibration | private |
| calibrate(PeakMap &calib_spectra, PeakMap &exp, std::vector< double > &exp_masses) | TOFCalibration | |
| check_defaults_ | DefaultParamHandler | protected |
| CMD enum value | ProgressLogger | |
| coeff_quad_fit_ | TOFCalibration | private |
| current_logger_ | ProgressLogger | mutableprotected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| endProgress() const | ProgressLogger | |
| error_medians_ | TOFCalibration | private |
| error_name_ | DefaultParamHandler | protected |
| errors_ | TOFCalibration | private |
| exp_masses_ | TOFCalibration | private |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getML1s() const | TOFCalibration | inline |
| getML2s() const | TOFCalibration | inline |
| getML3s() const | TOFCalibration | inline |
| getMonoisotopicPeaks_(PeakMap &calib_peaks, std::vector< std::vector< unsigned int > > &monoiso_peaks) | TOFCalibration | private |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| matchMasses_(PeakMap &calib_peaks, std::vector< std::vector< unsigned int > > &monoiso_peaks, std::vector< unsigned int > &obs_masses, std::vector< double > &exp_masses, unsigned int idx) | TOFCalibration | private |
| ml1s_ | TOFCalibration | private |
| ml2s_ | TOFCalibration | private |
| ml3s_ | TOFCalibration | private |
| mQ_(double ft, unsigned int spec) | TOFCalibration | inlineprivate |
| mQAv_(double ft) | TOFCalibration | inlineprivate |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| pickAndCalibrate(PeakMap &calib_spectra, PeakMap &exp, std::vector< double > &exp_masses) | TOFCalibration | |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| setLogType(LogType type) const | ProgressLogger | |
| setML1s(const std::vector< double > &ml1s) | TOFCalibration | inline |
| setML2s(const std::vector< double > &ml2s) | TOFCalibration | inline |
| setML3s(const std::vector< double > &ml3s) | TOFCalibration | inline |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| subsections_ | DefaultParamHandler | protected |
| TOFCalibration() | TOFCalibration | |
| type_ | ProgressLogger | mutableprotected |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~ProgressLogger() | ProgressLogger | |
| ~TOFCalibration() override | TOFCalibration | |
1.8.16