InspectOutfile Member List

This is the complete list of members for InspectOutfile, including all inherited members.

compressTrieDB(const String &database_filename, const String &index_filename, std::vector< Size > &wanted_records, const String &snd_database_filename, const String &snd_index_filename, bool append=false)	InspectOutfile
db_pos_length_	InspectOutfile	protectedstatic
generateTrieDB(const String &source_database_filename, const String &database_filename, const String &index_filename, bool append=false, const String species="")	InspectOutfile
getACAndACType(String line, String &accession, String &accession_type)	InspectOutfile
getExperiment(PeakMap &exp, String &type, const String &in_filename)	InspectOutfile	inline
getLabels(const String &source_database_filename, String &ac_label, String &sequence_start_label, String &sequence_end_label, String &comment_label, String &species_label)	InspectOutfile
getPrecursorRTandMZ(const std::vector< std::pair< String, std::vector< std::pair< Size, Size > > > > &files_and_peptide_identification_with_scan_number, std::vector< PeptideIdentification > &ids)	InspectOutfile
getSearchEngineAndVersion(const String &cmd_output, ProteinIdentification &protein_identification)	InspectOutfile
getSequences(const String &database_filename, const std::map< Size, Size > &wanted_records, std::vector< String > &sequences)	InspectOutfile
getWantedRecords(const String &result_filename, double p_value_threshold)	InspectOutfile
InspectOutfile()	InspectOutfile
InspectOutfile(const InspectOutfile &inspect_outfile)	InspectOutfile
load(const String &result_filename, std::vector< PeptideIdentification > &peptide_identifications, ProteinIdentification &protein_identification, const double p_value_threshold, const String &database_filename="")	InspectOutfile
operator=(const InspectOutfile &inspect_outfile)	InspectOutfile
operator==(const InspectOutfile &inspect_outfile) const	InspectOutfile
protein_name_length_	InspectOutfile	protectedstatic
readOutHeader(const String &filename, const String &header_line, Int &spectrum_file_column, Int &scan_column, Int &peptide_column, Int &protein_column, Int &charge_column, Int &MQ_score_column, Int &p_value_column, Int &record_number_column, Int &DB_file_pos_column, Int &spec_file_pos_column, Size &number_of_columns)	InspectOutfile
record_length_	InspectOutfile	protectedstatic
score_type_	InspectOutfile	protectedstatic
trie_db_pos_length_	InspectOutfile	protectedstatic
trie_delimiter_	InspectOutfile	protectedstatic
~InspectOutfile()	InspectOutfile	virtual