| centroided_ | FeatureFinderMultiplexAlgorithm | protected |
| charge_max_ | FeatureFinderMultiplexAlgorithm | protected |
| charge_min_ | FeatureFinderMultiplexAlgorithm | protected |
| check_defaults_ | DefaultParamHandler | protected |
| CMD enum value | ProgressLogger | |
| consensus_map_ | FeatureFinderMultiplexAlgorithm | protected |
| correctPeptideIntensities_(const MultiplexIsotopicPeakPattern &pattern, std::map< size_t, SplinePackage > &spline_chromatograms, const std::vector< double > &rt_peptide, std::vector< double > &intensity_peptide) | FeatureFinderMultiplexAlgorithm | protected |
| current_logger_ | ProgressLogger | mutableprotected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| determinePeptideIntensitiesCentroided_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteCentroided > &satellites) | FeatureFinderMultiplexAlgorithm | protected |
| determinePeptideIntensitiesProfile_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteProfile > &satellites) | FeatureFinderMultiplexAlgorithm | protected |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | protected |
| exp_blacklist_ | FeatureFinderMultiplexAlgorithm | protected |
| exp_centroid_ | FeatureFinderMultiplexAlgorithm | protected |
| exp_profile_ | FeatureFinderMultiplexAlgorithm | protected |
| feature_map_ | FeatureFinderMultiplexAlgorithm | protected |
| FeatureFinderMultiplexAlgorithm() | FeatureFinderMultiplexAlgorithm | |
| generateMapsCentroided_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, std::vector< std::map< int, GridBasedCluster > > &cluster_results) | FeatureFinderMultiplexAlgorithm | protected |
| generateMapsProfile_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, const std::vector< std::map< int, GridBasedCluster > > &cluster_results) | FeatureFinderMultiplexAlgorithm | protected |
| generatePeakPatterns_(int charge_min, int charge_max, int peaks_per_peptide_max, const std::vector< MultiplexDeltaMasses > &mass_pattern_list) | FeatureFinderMultiplexAlgorithm | protected |
| getBlacklist() | FeatureFinderMultiplexAlgorithm | |
| getConsensusMap() | FeatureFinderMultiplexAlgorithm | |
| getDefaults() const | DefaultParamHandler | |
| getFeatureMap() | FeatureFinderMultiplexAlgorithm | |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| isotopes_per_peptide_max_ | FeatureFinderMultiplexAlgorithm | protected |
| isotopes_per_peptide_min_ | FeatureFinderMultiplexAlgorithm | protected |
| label_mass_shift_ | FeatureFinderMultiplexAlgorithm | protected |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| prog_log_ | FeatureFinderMultiplexAlgorithm | protected |
| progress_ | FeatureFinderMultiplexAlgorithm | protected |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| run(MSExperiment &exp, bool progress) | FeatureFinderMultiplexAlgorithm | |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| subsections_ | DefaultParamHandler | protected |
| type_ | ProgressLogger | mutableprotected |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~ProgressLogger() | ProgressLogger | |
1.8.16