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ANALYSIS
MAPMATCHING
BaseSuperimposer.h
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Timo Sachsenberg $
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// $Authors: Clemens Groepl, Marc Sturm $
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h
>
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#include <
OpenMS/CONCEPT/ProgressLogger.h
>
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#include <
OpenMS/KERNEL/ConsensusMap.h
>
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#include <
OpenMS/DATASTRUCTURES/DefaultParamHandler.h
>
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#include <utility>
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#include <fstream>
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namespace
OpenMS
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{
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class
OPENMS_DLLAPI
BaseSuperimposer
:
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public
DefaultParamHandler
,
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public
ProgressLogger
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{
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public
:
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BaseSuperimposer
();
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~
BaseSuperimposer
()
override
;
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virtual
void
run(
const
ConsensusMap
& map_model,
const
ConsensusMap
& map_scene,
TransformationDescription
& transformation) = 0;
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static
void
registerChildren();
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private
:
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BaseSuperimposer
(
const
BaseSuperimposer
&);
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BaseSuperimposer
& operator=(
const
BaseSuperimposer
&);
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};
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}
// namespace OpenMS
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DefaultParamHandler.h
ConsensusMap.h
TransformationDescription.h
OpenMS::DefaultParamHandler
A base class for all classes handling default parameters.
Definition:
DefaultParamHandler.h:91
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
OpenMS::ProgressLogger
Base class for all classes that want to report their progress.
Definition:
ProgressLogger.h:54
ProgressLogger.h
OpenMS::ConsensusMap
A container for consensus elements.
Definition:
ConsensusMap.h:79
OpenMS::BaseSuperimposer
The base class of all superimposer algorithms.
Definition:
BaseSuperimposer.h:56
OpenMS::TransformationDescription
Generic description of a coordinate transformation.
Definition:
TransformationDescription.h:61
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