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OpenMS
2.5.0
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78 void getIdentifications(std::vector<PeptideIdentification> & ids,
const PeakMap & exp)
override;
96 void reducePermuts_(std::set<String> & permuts,
const PeakSpectrum & CID_orig_spec,
double prefix,
double suffix);
98 void updateMembers_()
override;
IsotopeType
Definition: CompNovoIonScoringBase.h:59
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:77
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
double precursor_mass_tolerance_
Definition: CompNovoIdentificationCID.h:100
Simple class to store permutations and a score.
Definition: CompNovoIdentificationBase.h:186
Definition: CompNovoIonScoringBase.h:66
CompNovoIdentificationBase::Permut Permut
Definition: CompNovoIdentificationCID.h:88
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
run with CompNovoIdentificationCID
Definition: CompNovoIdentificationCID.h:53
CompNovoIonScoringBase::IonScore IonScore
Definition: CompNovoIdentificationCID.h:87
run with CompNovoIdentificationBase
Definition: CompNovoIdentificationBase.h:57
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:62
CompNovoIonScoringBase::IsotopeType IsotopeType
Definition: CompNovoIdentificationCID.h:86
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:50
The representation of a 1D spectrum.
Definition: MSSpectrum.h:67