DeNovoAlgorithm.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Timo Sachsenberg $
// $Authors: Sandro Andreotti, Andreas Bertsch$
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#pragma once
 
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/ANALYSIS/DENOVO/DeNovoIonScoring.h>
 
namespace OpenMS
{
  class PeptideIdentification;
 
  class OPENMS_DLLAPI DeNovoAlgorithm :
    public DefaultParamHandler
  {
public:
 
    DeNovoAlgorithm();
 
    ~DeNovoAlgorithm() override;
 
    DeNovoAlgorithm(const DeNovoAlgorithm & rhs);
 
    DeNovoAlgorithm & operator=(const DeNovoAlgorithm & rhs);
 
    virtual void generateCandidates(std::vector<PeptideIdentification> & candidates, const std::vector<std::vector<DeNovoIonScoring::IonScore> > & ion_scores, const PeakMap & exp) = 0;
 
    virtual void generateCandidates(PeptideIdentification & candidates, std::vector<DeNovoIonScoring::IonScore> & ion_scores, const PeakSpectrum & spec) = 0;
 
  };
 
} // namespace OpenMS