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EDTAFile.h
Go to the documentation of this file.
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Chris Bielow $
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// $Authors: Chris Bielow $
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/DATASTRUCTURES/String.h
>
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#include <
OpenMS/CONCEPT/Exception.h
>
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#include <
OpenMS/CONCEPT/LogStream.h
>
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#include <
OpenMS/KERNEL/ConsensusMap.h
>
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#include <
OpenMS/KERNEL/Feature.h
>
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#include <
OpenMS/FORMAT/TextFile.h
>
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#include <fstream>
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#include <vector>
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namespace
OpenMS
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{
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class
OPENMS_DLLAPI
EDTAFile
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{
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public
:
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EDTAFile
();
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virtual
~
EDTAFile
();
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private
:
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double
checkedToDouble_(
const
std::vector<String> & parts,
Size
index,
double
def = -1);
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Int
checkedToInt_(
const
std::vector<String> & parts,
Size
index,
Int
def = -1);
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public
:
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void
load(
const
String
& filename,
ConsensusMap
& consensus_map);
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void
store(
const
String
& filename,
const
ConsensusMap
& map)
const
;
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void
store(
const
String
& filename,
const
FeatureMap
& map)
const
;
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};
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}
// namespace OpenMS
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LogStream.h
TextFile.h
OpenMS::EDTAFile
File adapter for Enhanced DTA files.
Definition:
EDTAFile.h:85
OpenMS::String
A more convenient string class.
Definition:
String.h:58
Feature.h
ConsensusMap.h
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition:
Types.h:127
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
Exception.h
int
OpenMS::ConsensusMap
A container for consensus elements.
Definition:
ConsensusMap.h:79
OpenMS::FeatureMap
A container for features.
Definition:
FeatureMap.h:95
String.h
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