ExperimentalSettings.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/METADATA/Sample.h>
#include <OpenMS/METADATA/MetaInfoInterface.h>
#include <OpenMS/METADATA/HPLC.h>
#include <OpenMS/METADATA/SourceFile.h>
#include <OpenMS/METADATA/ContactPerson.h>
#include <OpenMS/METADATA/Instrument.h>
#include <OpenMS/METADATA/DocumentIdentifier.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
 
#include <vector>
 
namespace OpenMS
{
  class OPENMS_DLLAPI ExperimentalSettings :
    public MetaInfoInterface,
    public DocumentIdentifier
  {
public:
 
    ExperimentalSettings() = default;
    ExperimentalSettings(const ExperimentalSettings &) = default;
    ExperimentalSettings(ExperimentalSettings&&) = default;
    ~ExperimentalSettings() override;
 
    ExperimentalSettings & operator=(const ExperimentalSettings &) = default;
    ExperimentalSettings& operator=(ExperimentalSettings&&) & = default;
 
    bool operator==(const ExperimentalSettings & rhs) const;
    bool operator!=(const ExperimentalSettings & rhs) const;
 
    const Sample & getSample() const;
    Sample & getSample();
    void setSample(const Sample & sample);
 
    const std::vector<SourceFile> & getSourceFiles() const;
    std::vector<SourceFile> & getSourceFiles();
    void setSourceFiles(const std::vector<SourceFile> & source_files);
 
    const std::vector<ContactPerson> & getContacts() const;
    std::vector<ContactPerson> & getContacts();
    void setContacts(const std::vector<ContactPerson> & contacts);
 
    const Instrument & getInstrument() const;
    Instrument & getInstrument();
    void setInstrument(const Instrument & instrument);
 
    const HPLC & getHPLC() const;
    HPLC & getHPLC();
    void setHPLC(const HPLC & hplc);
 
    const DateTime & getDateTime() const;
    void setDateTime(const DateTime & date);
 
    const String & getComment() const;
    void setComment(const String & comment);
 
    const std::vector<ProteinIdentification> & getProteinIdentifications() const;
    std::vector<ProteinIdentification> & getProteinIdentifications();
    void setProteinIdentifications(const std::vector<ProteinIdentification> & protein_identifications);
 
    const String & getFractionIdentifier() const;
    void setFractionIdentifier(const String & fraction_identifier);
 
protected:
    Sample sample_;
    std::vector<SourceFile> source_files_;
    std::vector<ContactPerson> contacts_;
    Instrument instrument_;
    HPLC hplc_;
    DateTime datetime_;
    String comment_;
    std::vector<ProteinIdentification> protein_identifications_;
    String fraction_identifier_;
  };
 
  OPENMS_DLLAPI std::ostream & operator<<(std::ostream & os, const ExperimentalSettings & exp);
 
} // namespace OpenMS