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OpenMS
2.5.0
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103 virtual void run() = 0;
130 if (seeds.size() != 0)
132 throw Exception::IllegalArgument(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION,
"The used feature detection algorithm does not support user-specified seed lists!");
virtual void run()=0
Main method that implements the actual algorithm.
Summary()
Initial values.
Definition: FeatureFinderAlgorithm.h:61
FeatureFinderAlgorithm()
default constructor
Definition: FeatureFinderAlgorithm.h:86
A method or algorithm argument contains illegal values.
Definition: Exception.h:648
FeatureFinderAlgorithm & operator=(const FeatureFinderAlgorithm &)
Not implemented.
std::map< String, UInt > mz_model
count used mz models
Definition: FeatureFinderAlgorithm.h:55
FeatureFinder * ff_
Pointer to the calling FeatureFinder that is used to access the feature flags.
Definition: FeatureFinderAlgorithm.h:145
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:77
UInt no_exceptions
Definition: FeatureFinderAlgorithm.h:54
void setData(const MapType &map, FeatureMap &features, FeatureFinder &ff)
Sets a reference to the calling FeatureFinder.
Definition: FeatureFinderAlgorithm.h:116
MapType::IntensityType IntensityType
Intensity type of peaks.
Definition: FeatureFinderAlgorithm.h:83
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:91
std::map< float, UInt > mz_stdev
count used mz standard deviations
Definition: FeatureFinderAlgorithm.h:56
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
The main feature finder class.
Definition: FeatureFinder.h:56
const MapType * map_
Input data pointer.
Definition: FeatureFinderAlgorithm.h:139
PeakMap MapType
Input map type.
Definition: FeatureFinderAlgorithm.h:79
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
static void registerChildren()
register all derived classes here (see FeatureFinderAlgorithm_impl.h)
Abstract base class for FeatureFinder algorithms.
Definition: FeatureFinderAlgorithm.h:74
std::vector< UInt > charge
count used charges
Definition: FeatureFinderAlgorithm.h:57
std::map< String, UInt > exception
count exceptions
Definition: FeatureFinderAlgorithm.h:53
A container for features.
Definition: FeatureMap.h:95
MapType::CoordinateType CoordinateType
Coordinate/Position type of peaks.
Definition: FeatureFinderAlgorithm.h:81
virtual void setSeeds(const FeatureMap &seeds)
Sets a reference to the calling FeatureFinder.
Definition: FeatureFinderAlgorithm.h:128
Summary of fitting results.
Definition: FeatureFinderAlgorithm.h:51
Param defaults_
Container for default parameters. This member should be filled in the constructor of derived classes!
Definition: DefaultParamHandler.h:156
~FeatureFinderAlgorithm() override
destructor
Definition: FeatureFinderAlgorithm.h:95
Management and storage of parameters / INI files.
Definition: Param.h:73
FeatureMap * features_
Output data pointer.
Definition: FeatureFinderAlgorithm.h:142
double corr_min
Definition: FeatureFinderAlgorithm.h:58
virtual Param getDefaultParameters() const
Returns the default parameters. Reimplement.
Definition: FeatureFinderAlgorithm.h:110