OpenMS  2.5.0
IsotopeWavelet.h
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31 // $Maintainer: Timo Sachsenberg$
32 // $Authors: $
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34 
35 #pragma once
36 
40 
41 namespace OpenMS
42 {
50  class OPENMS_DLLAPI IsotopeWavelet
51  {
52 public:
53 
55  static IsotopeWavelet * init(const double max_m, const UInt max_charge);
56 
59  {
60  return me_;
61  }
62 
64  static void destroy();
65 
66 
76  static double getValueByMass(const double t, const double m, const UInt z, const Int mode = +1)
77  {
78  return getValueByLambda(getLambdaL(m * z - z * mode * Constants::IW_PROTON_MASS), t * z + 1);
79  }
80 
89  static double getValueByLambda(const double lambda, const double tz1);
90 
103  static double getValueByLambdaExtrapol(const double lambda, const double tz1);
104 
105  static double getValueByLambdaExact(const double lambda, const double tz1);
106 
107 
110  {
111  return max_charge_;
112  }
113 
115  static void setMaxCharge(const UInt max_charge)
116  {
117  max_charge_ = max_charge;
118  }
119 
124  static double getTableSteps()
125  {
126  return table_steps_;
127  }
128 
133  static double getInvTableSteps()
134  {
135  return inv_table_steps_;
136  }
137 
139  static void setTableSteps(const double table_steps)
140  {
141  inv_table_steps_ = 1. / table_steps;
142  table_steps_ = table_steps;
143  }
144 
146  static double getLambdaL(const double m);
147 
148 
153  static const IsotopeDistribution::ContainerType & getAveragine(const double m, UInt * size = nullptr);
154 
155 
158  {
159  return gamma_table_max_index_;
160  }
161 
164  {
165  return exp_table_max_index_;
166  }
167 
170  static float myPow(float a, float b);
171 
172  static UInt getMzPeakCutOffAtMonoPos(const double mass, const UInt z);
173 
174  static UInt getNumPeakCutOff(const double mass, const UInt z);
175 
176  static UInt getNumPeakCutOff(const double mz);
177 
178 
179 protected:
180 
182  static IsotopeWavelet * me_;
183 
185  IsotopeWavelet();
186 
190  IsotopeWavelet(const double max_m, const UInt max_charge);
191 
192 
194  virtual ~IsotopeWavelet();
195 
196 
205  static void preComputeExpensiveFunctions_(const double max_m);
206 
207 
210  static void computeIsotopeDistributionSize_(const double max_m);
211 
212 
217  static float myPow2_(float i);
218 
223  static float myLog2_(float i);
224 
226  union fi_
227  {
229  float f;
230  };
231 
234 
236  static double table_steps_;
237  static double inv_table_steps_;
238 
240  static std::vector<double> gamma_table_;
241  static std::vector<double> gamma_table_new_;
242 
244  static std::vector<double> exp_table_;
245 
247  static std::vector<double> sine_table_;
248 
252 
255 
256  };
257 
258 } //namespace
259 
OpenMS::IsotopeDistribution::ContainerType
std::vector< MassAbundance > ContainerType
Definition: IsotopeDistribution.h:72
OpenMS::IsotopeWavelet::fi_
Internal union for fast computation of the power function.
Definition: IsotopeWavelet.h:226
OpenMS::IsotopeWavelet::getExpTableMaxIndex
static Size getExpTableMaxIndex()
Returns the largest possible index for the pre-sampled exp table.
Definition: IsotopeWavelet.h:163
OpenMS::IsotopeWavelet::table_steps_
static double table_steps_
Definition: IsotopeWavelet.h:236
OpenMS::IsotopeWavelet::getInstance
static IsotopeWavelet * getInstance()
Definition: IsotopeWavelet.h:58
OpenMS::IsotopeWavelet::gamma_table_new_
static std::vector< double > gamma_table_new_
Definition: IsotopeWavelet.h:241
OpenMS::IsotopeWavelet::exp_table_max_index_
static Size exp_table_max_index_
Definition: IsotopeWavelet.h:254
OpenMS::IsotopeWavelet
Implements the isotope wavelet function.
Definition: IsotopeWavelet.h:50
OpenMS::IsotopeWavelet::getValueByMass
static double getValueByMass(const double t, const double m, const UInt z, const Int mode=+1)
Returns the value of the isotope wavelet at position t. Usually, you do not need to call this functio...
Definition: IsotopeWavelet.h:76
OpenMS::CoarseIsotopePatternGenerator
Isotope pattern generator for coarse isotope distributions.
Definition: CoarseIsotopePatternGenerator.h:96
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
OpenMS::IsotopeWavelet::fi_::f
float f
Definition: IsotopeWavelet.h:229
OpenMS::IsotopeWavelet::getGammaTableMaxIndex
static Size getGammaTableMaxIndex()
Returns the largest possible index for the pre-sampled gamma table.
Definition: IsotopeWavelet.h:157
OpenMS::IsotopeWavelet::max_charge_
static UInt max_charge_
Definition: IsotopeWavelet.h:233
OpenMS::IsotopeWavelet::fi_::i
Int i
Definition: IsotopeWavelet.h:228
OpenMS::Constants::IW_PROTON_MASS
const double IW_PROTON_MASS
Definition: IsotopeWaveletConstants.h:68
OpenMS::IsotopeWavelet::getMaxCharge
static UInt getMaxCharge()
Returns the largest charge state we will consider.
Definition: IsotopeWavelet.h:109
OpenMS::IsotopeWavelet::getTableSteps
static double getTableSteps()
Returns the table_steps_ parameter.
Definition: IsotopeWavelet.h:124
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::IsotopeWavelet::sine_table_
static std::vector< double > sine_table_
Definition: IsotopeWavelet.h:247
int
CoarseIsotopePatternGenerator.h
OpenMS::IsotopeWavelet::averagine_
static IsotopeDistribution averagine_
Definition: IsotopeWavelet.h:251
IsotopeWaveletConstants.h
OpenMS::IsotopeWavelet::me_
static IsotopeWavelet * me_
Definition: IsotopeWavelet.h:182
OpenMS::IsotopeWavelet::gamma_table_max_index_
static Size gamma_table_max_index_
Definition: IsotopeWavelet.h:253
OpenMS::UInt
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
OpenMS::IsotopeWavelet::getInvTableSteps
static double getInvTableSteps()
Returns the inv_table_steps_ parameter.
Definition: IsotopeWavelet.h:133
OpenMS::IsotopeDistribution
Definition: IsotopeDistribution.h:64
OpenMS::IsotopeWavelet::setMaxCharge
static void setMaxCharge(const UInt max_charge)
Sets the max_charge parameter.
Definition: IsotopeWavelet.h:115
OpenMS::IsotopeWavelet::setTableSteps
static void setTableSteps(const double table_steps)
Sets the table_steps parameter.
Definition: IsotopeWavelet.h:139
OpenMS::IsotopeWavelet::inv_table_steps_
static double inv_table_steps_
Definition: IsotopeWavelet.h:237
OpenMS::IsotopeWavelet::gamma_table_
static std::vector< double > gamma_table_
Definition: IsotopeWavelet.h:240
OpenMS::IsotopeWavelet::solver_
static CoarseIsotopePatternGenerator solver_
Definition: IsotopeWavelet.h:250
MSSpectrum.h
OpenMS::IsotopeWavelet::exp_table_
static std::vector< double > exp_table_
Definition: IsotopeWavelet.h:244