MRMFeaturePickerFile.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
//
// This software is released under a three-clause BSD license:
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//    may be used to endorse or promote products derived from this software
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// $Maintainer: Douglas McCloskey, Pasquale Domenico Colaianni $
// $Authors: Douglas McCloskey, Pasquale Domenico Colaianni $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h> // OPENMS_DLLAPI
#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeaturePicker.h>
#include <OpenMS/FORMAT/CsvFile.h>
#include <boost/regex.hpp>
#include <iostream>
#include <map>
 
namespace OpenMS
{
  class OPENMS_DLLAPI MRMFeaturePickerFile :
    public CsvFile
  {
public:
    MRMFeaturePickerFile() = default;
    ~MRMFeaturePickerFile() = default;
 
    void load(
      const String& filename,
      std::vector<MRMFeaturePicker::ComponentParams>& cp_list,
      std::vector<MRMFeaturePicker::ComponentGroupParams>& cgp_list
    );
 
protected:
    bool extractParamsFromLine_(
      const StringList& line,
      const std::map<String, Size>& headers,
      MRMFeaturePicker::ComponentParams& cp,
      MRMFeaturePicker::ComponentGroupParams& cgp
    ) const;
 
    void setCastValue_(const String& key, const String& value, Param& params) const;
  };
}