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OpenMS
2.5.0
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82 virtual void updateMembers_();
91 void filterCCs_(
const KDTreeFeatureMaps& kd_data,
const std::map<
Size, std::vector<Size> >& ccs, std::map<
Size, std::vector<Size> >& filtered_ccs)
const;
99 std::vector<TransformationModel::DataPoints>
fit_data_;
double rt_tol_secs_
RT tolerance.
Definition: MapAlignmentAlgorithmKD.h:111
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
An efficient reference-free feature map alignment algorithm for unlabeled data.
Definition: MapAlignmentAlgorithmKD.h:61
std::vector< TransformationModel::DataPoints > fit_data_
RT data for fitting the LOWESS.
Definition: MapAlignmentAlgorithmKD.h:99
double mz_tol_
m/z tolerance
Definition: MapAlignmentAlgorithmKD.h:114
Param param_
Parameters.
Definition: MapAlignmentAlgorithmKD.h:105
std::vector< TransformationModelLowess * > transformations_
LOWESS transformations.
Definition: MapAlignmentAlgorithmKD.h:102
Management and storage of parameters / INI files.
Definition: Param.h:73
bool mz_ppm_
m/z unit ppm?
Definition: MapAlignmentAlgorithmKD.h:117
double max_pairwise_log_fc_
Maximum absolute log10 fold change threshold between compatible features.
Definition: MapAlignmentAlgorithmKD.h:108
Stores a set of features, together with a 2D tree for fast search.
Definition: KDTreeFeatureMaps.h:49