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OpenMS
2.5.0
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61 std::vector<PeptideIdentification>& identifications,
63 std::map<
String, std::vector<AASequence> >& peptides,
70 void endElement(
const XMLCh*
const ,
const XMLCh*
const ,
const XMLCh*
const qname)
override;
73 void startElement(
const XMLCh*
const ,
const XMLCh*
const ,
const XMLCh*
const qname,
const xercesc::Attributes& attributes)
override;
76 void characters(
const XMLCh*
const chars,
const XMLSize_t )
override;
79 static std::vector<String> splitModificationBySpecifiedAA(
String mod);
ProteinIdentification & protein_identification_
the protein identifications
Definition: MascotXMLHandler.h:83
String character_buffer_
filled by MascotXMLHandler::characters
Definition: MascotXMLHandler.h:99
Base class for XML handlers.
Definition: XMLHandler.h:151
std::vector< String > remove_fixed_mods_
Definition: MascotXMLHandler.h:105
A more convenient string class.
Definition: String.h:58
ProteinIdentification::SearchParameters search_parameters_
Definition: MascotXMLHandler.h:93
Representation of a protein hit.
Definition: ProteinHit.h:57
String actual_title_
Definition: MascotXMLHandler.h:95
StringList tags_open_
tracking the current XML tree
Definition: MascotXMLHandler.h:98
Representation of a protein identification run.
Definition: ProteinIdentification.h:71
Handler that is used for parsing MascotXML data.
Definition: MascotXMLHandler.h:55
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
const SpectrumMetaDataLookup & lookup_
Helper object for looking up RT information.
Definition: MascotXMLHandler.h:108
String minor_version_
Definition: MascotXMLHandler.h:101
String identifier_
Definition: MascotXMLHandler.h:94
PeptideHit actual_peptide_hit_
Definition: MascotXMLHandler.h:86
Representation of a peptide evidence.
Definition: PeptideEvidence.h:50
std::vector< PeptideIdentification > & id_data_
the identifications (storing the peptide hits)
Definition: MascotXMLHandler.h:84
bool no_rt_error_
Error for missing RT information already reported?
Definition: MascotXMLHandler.h:111
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
PeptideEvidence actual_peptide_evidence_
Definition: MascotXMLHandler.h:87
UInt actual_query_
Definition: MascotXMLHandler.h:92
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
DateTime date_
Definition: MascotXMLHandler.h:90
std::map< String, std::vector< AASequence > > & modified_peptides_
Definition: MascotXMLHandler.h:96
UInt peptide_identification_index_
Definition: MascotXMLHandler.h:88
String date_time_string_
Definition: MascotXMLHandler.h:91
String tag_
Definition: MascotXMLHandler.h:89
Search parameters of the DB search.
Definition: ProteinIdentification.h:221
String major_version_
Definition: MascotXMLHandler.h:100
ProteinHit actual_protein_hit_
Definition: MascotXMLHandler.h:85
DateTime Class.
Definition: DateTime.h:54
Representation of a peptide hit.
Definition: PeptideHit.h:54