MockObjects.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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// $Maintainer: Hannes Roest $
// $Authors: Hannes Roest $
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#pragma once
 
#include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
#include <OpenMS/OPENSWATHALGO/DATAACCESS/ITransition.h>
 
#include <boost/shared_ptr.hpp>
#include <map>
#include <vector>
#include <string>
 
namespace OpenSwath
{
 
  class OPENSWATHALGO_DLLAPI MockFeature :
    public OpenSwath::IFeature
  {
public:
 
    MockFeature();
 
    ~MockFeature() override;
 
    void getRT(std::vector<double>& rt) const override;
 
    void getIntensity(std::vector<double>& intens) const override;
 
    float getIntensity() const override;
 
    double getRT() const override;
 
    std::vector<double> m_rt_vec;
    std::vector<double> m_intensity_vec;
    float m_intensity;
    double m_rt;
  };
 
  class OPENSWATHALGO_DLLAPI MockMRMFeature :
    public OpenSwath::IMRMFeature
  {
public:
 
    MockMRMFeature();
 
    ~MockMRMFeature() override;
 
    boost::shared_ptr<OpenSwath::IFeature> getFeature(std::string nativeID) override;
 
    boost::shared_ptr<OpenSwath::IFeature> getPrecursorFeature(std::string nativeID) override;
 
    std::vector<std::string> getNativeIDs() const override;
 
    std::vector<std::string> getPrecursorIDs() const override;
 
    float getIntensity() const override;
 
    double getRT() const override;
 
    size_t size() const override;
 
    std::map<std::string, boost::shared_ptr<MockFeature> > m_features;
    std::map<std::string, boost::shared_ptr<MockFeature> > m_precursor_features;
    float m_intensity;
    double m_rt;
  };
 
  class OPENSWATHALGO_DLLAPI MockTransitionGroup :
    public OpenSwath::ITransitionGroup
  {
public:
 
    MockTransitionGroup();
 
    ~MockTransitionGroup() override;
 
    std::size_t size() const override;
 
    std::vector<std::string> getNativeIDs() const override;
 
    void getLibraryIntensities(std::vector<double>& intensities) const override;
 
    std::size_t m_size;
    std::vector<std::string> m_native_ids;
    std::vector<double> m_library_intensities;
  };
 
 
  class OPENSWATHALGO_DLLAPI MockSignalToNoise :
    public OpenSwath::ISignalToNoise
  {
public:
    MockSignalToNoise();
 
    double getValueAtRT(double /* RT */) override;
 
    double m_sn_value;
  };
 
} //end namespace OpenMS