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OpenMS
2.5.0
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71 void endElement(
const XMLCh *
const ,
const XMLCh *
const ,
const XMLCh *
const qname)
override;
74 void startElement(
const XMLCh *
const ,
const XMLCh *
const ,
const XMLCh *
const qname,
const xercesc::Attributes & attributes)
override;
77 void characters(
const XMLCh *
const chars,
const XMLSize_t length)
override;
80 void writeTo(std::ostream & os)
override;
97 void handleCVParam_(
const String & parent_parent_tag,
const String & parent_tag,
const String & accession,
const String & name,
const String & value,
const xercesc::Attributes & attributes,
const String & cv_ref,
const String & unit_accession =
"");
100 void handleUserParam_(
const String & parent_parent_tag,
const String & parent_tag,
const String & name,
const String & type,
const String & value);
116 void writeFeature_(
String & feature_xml,
const std::vector<FeatureMap >& fm,
UInt indentation_level);
140 std::map<String, ConsensusFeature::Ratio>
r_rtemp_;
142 std::map<String, ConsensusFeature::Ratio>
r_r_obj_;
Definition: MSQuantifications.h:128
const ProgressLogger & logger_
Progress logger.
Definition: MzQuantMLHandler.h:85
std::set< DataProcessing::ProcessingAction > current_pas_
Definition: MzQuantMLHandler.h:148
Representation of a controlled vocabulary.
Definition: ControlledVocabulary.h:54
std::map< int, DataProcessing > current_orderedps_
Definition: MzQuantMLHandler.h:146
Base class for XML handlers.
Definition: XMLHandler.h:151
XML handler for MzQuantMLFile.
Definition: MzQuantMLHandler.h:53
MSQuantifications::Assay current_assay_
Definition: MzQuantMLHandler.h:134
const MSQuantifications * cmsq_
Definition: MzQuantMLHandler.h:94
String current_id_
Definition: MzQuantMLHandler.h:128
A more convenient string class.
Definition: String.h:58
String tag_
Definition: MzQuantMLHandler.h:90
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
std::vector< String > current_col_types_
Definition: MzQuantMLHandler.h:150
std::map< String, ConsensusFeature > cf_cf_obj_
Definition: MzQuantMLHandler.h:138
std::vector< MetaInfo > up_stack_
Definition: MzQuantMLHandler.h:132
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
std::vector< double > current_dm_values_
Definition: MzQuantMLHandler.h:151
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:54
std::map< String, String > numden_r_ids_
Definition: MzQuantMLHandler.h:141
std::map< String, ConsensusFeature::Ratio > r_r_obj_
Definition: MzQuantMLHandler.h:142
std::map< String, String > f_cf_ids_
Definition: MzQuantMLHandler.h:137
std::vector< double > current_row_
Definition: MzQuantMLHandler.h:152
ControlledVocabulary cv_
Controlled vocabulary (hopefully the psi-pi from OpenMS/share/OpenMS/CV/psi-pi.obo)
Definition: MzQuantMLHandler.h:88
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
std::map< String, Software > current_sws_
Definition: MzQuantMLHandler.h:145
std::map< String, ConsensusFeature::Ratio > r_rtemp_
Definition: MzQuantMLHandler.h:140
Representation of a CV term.
Definition: ControlledVocabulary.h:60
std::map< String, FeatureHandle > f_f_obj_
Definition: MzQuantMLHandler.h:139
String current_cf_id_
Definition: MzQuantMLHandler.h:129
std::pair< int, DataProcessing > current_dp_
Definition: MzQuantMLHandler.h:147
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:50
std::multimap< String, String > cm_cf_ids_
Definition: MzQuantMLHandler.h:136
Definition: MSQuantifications.h:52
std::vector< CVTerm > cvp_stack_
Definition: MzQuantMLHandler.h:133
MSQuantifications * msq_
Definition: MzQuantMLHandler.h:92
std::map< String, std::vector< ExperimentalSettings > > current_files_
1.rawfilesgroup_ref 2.inputfiles for each assay as ExperimentalSettings
Definition: MzQuantMLHandler.h:127
Size current_count_
Definition: MzQuantMLHandler.h:130