PeptideIndexing.h File Reference

#include <OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h>
#include <OpenMS/CHEMISTRY/ProteaseDigestion.h>
#include <OpenMS/CHEMISTRY/ProteaseDB.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/DATASTRUCTURES/FASTAContainer.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/METADATA/PeptideEvidence.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/SYSTEM/StopWatch.h>
#include <OpenMS/SYSTEM/SysInfo.h>
#include <atomic>
#include <algorithm>
#include <fstream>

Go to the source code of this file.

Classes
class	PeptideIndexing
	Refreshes the protein references for all peptide hits in a vector of PeptideIdentifications and adds target/decoy information. More...
struct	PeptideIndexing::PeptideProteinMatchInformation
struct	PeptideIndexing::FoundProteinFunctor

Namespaces
	OpenMS
	Main OpenMS namespace.