OpenMS  2.5.0
RTAlignment.h
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31 // $Maintainer: Chris Bielow $
32 // $Authors: Juliane Schmachtenberg, Chris Bielow $
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34 
35 #pragma once
36 
37 #include <OpenMS/QC/QCBase.h>
38 
39 namespace OpenMS
40 {
41  class FeatureMap;
42  class PeptideIdentification;
43  class TransformationDescription;
44 
53  class OPENMS_DLLAPI RTAlignment : public QCBase
54  {
55  public:
57  RTAlignment() = default;
58 
60  virtual ~RTAlignment() = default;
61 
69  void compute(FeatureMap& fm, const TransformationDescription& trafo) const;
70 
78  void compute(std::vector<PeptideIdentification>& ids, const TransformationDescription& trafo) const;
79 
81  const String& getName() const override;
82 
84  Status requires() const override;
85 
86  private:
88  const String name_ = "RTAlignment";
89  };
90 }
OpenMS::RTAlignment
Take the original retention time before map alignment and use the alignment's trafoXML for calculatio...
Definition: RTAlignment.h:53
OpenMS::QCBase::Status
Storing a status of available/needed inputs (i.e. a set of Requires) as UInt64.
Definition: QCBase.h:118
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::QCBase
This class serves as an abstract base class for all QC classes.
Definition: QCBase.h:52
OpenMS::FeatureMap
A container for features.
Definition: FeatureMap.h:95
OpenMS::TransformationDescription
Generic description of a coordinate transformation.
Definition: TransformationDescription.h:61
QCBase.h