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OpenMS
2.5.0
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38 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>
bool createFeatureElutionProfiles_
Definition: SuperHirnParameters.h:198
double getMinIntensity()
Definition: SuperHirnParameters.h:366
double lowIntensityMSSignalThreshold_
Definition: SuperHirnParameters.h:207
static SuperHirnParameters * instance()
Definition: SuperHirnParameters.h:223
int getMinFeatureChrg()
Definition: SuperHirnParameters.h:274
double getMaxFeatureMZ()
Definition: SuperHirnParameters.h:269
int maxFeatureChrg_
Definition: SuperHirnParameters.h:156
SuperHirn parameters singleton class containing all static configuration variables.
Definition: SuperHirnParameters.h:47
bool storeAllLowProbabilityMS2Scans()
Definition: SuperHirnParameters.h:391
double getIntensityFloor()
Definition: SuperHirnParameters.h:371
double minTR_
Definition: SuperHirnParameters.h:151
double ppmToleranceForMZClustering_
Definition: SuperHirnParameters.h:205
SuperHirnParameters & operator=(const SuperHirnParameters &)
Definition: SuperHirnParameters.h:218
int backgroundIntensityBinsMinBinCount_
Definition: SuperHirnParameters.h:149
double minIntensity_
Definition: SuperHirnParameters.h:189
bool storeAllLowProbabilityMS2Scans_
Definition: SuperHirnParameters.h:196
double getMaxInterScanRetentionTimeDistance()
Definition: SuperHirnParameters.h:294
double initialTrTolerance_
Definition: SuperHirnParameters.h:202
double maxTR_
Definition: SuperHirnParameters.h:152
double toleranceMZ_
Definition: SuperHirnParameters.h:159
double getLowIntensityMSSignalThreshold()
Definition: SuperHirnParameters.h:441
A facade for various Superhirn FeatureFinder classes. Use FeatureFinderAlgorithmSH instead.
Definition: FeatureFinderAlgorithmSHCtrl.h:55
int minNbClusterMembers_
Definition: SuperHirnParameters.h:161
double getBackgroundIntensityBinsIntens()
Definition: SuperHirnParameters.h:244
int getMaxFeatureChrg()
Definition: SuperHirnParameters.h:279
double getBackgroundIntensityBinsMZ()
Definition: SuperHirnParameters.h:239
double getBackgroundIntensityBinsTR()
Definition: SuperHirnParameters.h:234
bool centroidDataModus_
Definition: SuperHirnParameters.h:170
double trTol_
Definition: SuperHirnParameters.h:194
double getPeptideProbabilityThreshold()
Definition: SuperHirnParameters.h:386
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
bool ms1FeatureClustering()
Definition: SuperHirnParameters.h:401
float getIntensityThreshold()
Definition: SuperHirnParameters.h:284
double minFeatureMZ_
Definition: SuperHirnParameters.h:153
bool ms1FeatureClustering_
Definition: SuperHirnParameters.h:199
double ms1FeatureMergingTrTolerance_
Definition: SuperHirnParameters.h:203
std::map< int, float > scanTRIndex_
Definition: SuperHirnParameters.h:163
double massTolDa_
Definition: SuperHirnParameters.h:188
int getBackgroundIntensityBinsMinBinCount()
Definition: SuperHirnParameters.h:249
std::map< int, float > * getScanTRIndex()
Definition: SuperHirnParameters.h:304
double getPpmToleranceForMZClustering()
Definition: SuperHirnParameters.h:436
int getCentroidWindowWidth()
Definition: SuperHirnParameters.h:341
double peptideProbabilityThreshold_
Definition: SuperHirnParameters.h:195
int centroidWindowWidth_
Definition: SuperHirnParameters.h:171
double getMzTolPpm()
Definition: SuperHirnParameters.h:376
double getMS1TRResolution()
Definition: SuperHirnParameters.h:331
double intensityCV_
Definition: SuperHirnParameters.h:185
double getMs1FeatureMergingTrTolerance()
Definition: SuperHirnParameters.h:426
double backgroundIntensityBinsTR_
Definition: SuperHirnParameters.h:146
int getMinNbClusterMembers()
Definition: SuperHirnParameters.h:299
double getInitialTrTolerance()
Definition: SuperHirnParameters.h:421
double maxFeatureMZ_
Definition: SuperHirnParameters.h:154
bool centroidDataModus()
Definition: SuperHirnParameters.h:336
double getMs1PeakAreaTrResolution()
Definition: SuperHirnParameters.h:416
double ms1PeakAreaTrResolution_
Definition: SuperHirnParameters.h:201
double detectableIsotopeFactor_
Definition: SuperHirnParameters.h:184
void setInitIsotopeDist()
Definition: SuperHirnParameters.h:411
double getMassTolPpm()
Definition: SuperHirnParameters.h:356
double getPercentageIntensityElutionBorderVariation()
Definition: SuperHirnParameters.h:431
double backgroundIntensityBinsIntens_
Definition: SuperHirnParameters.h:148
double getToleranceMZ()
Definition: SuperHirnParameters.h:289
bool createFeatureElutionProfiles()
Definition: SuperHirnParameters.h:396
float intensityThreshold_
Definition: SuperHirnParameters.h:158
bool isInitIsotopeDist()
Definition: SuperHirnParameters.h:406
double getIntensityCV()
Definition: SuperHirnParameters.h:351
double backgroundIntensityBinsMZ_
Definition: SuperHirnParameters.h:147
double getMassTolDa()
Definition: SuperHirnParameters.h:361
double intensityFloor_
Definition: SuperHirnParameters.h:190
int minFeatureChrg_
Definition: SuperHirnParameters.h:155
static bool haveInstance_
Definition: SuperHirnParameters.h:144
double getMaxTR()
Definition: SuperHirnParameters.h:259
double getDetectableIsotopeFactor()
Definition: SuperHirnParameters.h:346
static SuperHirnParameters * instance_
Definition: SuperHirnParameters.h:143
double ms1TRResolution_
Definition: SuperHirnParameters.h:169
double mzTolPpm_
Definition: SuperHirnParameters.h:193
double massTolPpm_
Definition: SuperHirnParameters.h:187
double getMinTR()
Definition: SuperHirnParameters.h:254
double getMinFeatureMZ()
Definition: SuperHirnParameters.h:264
double getTrTol()
Definition: SuperHirnParameters.h:381
double percentageIntensityElutionBorderVariation_
Definition: SuperHirnParameters.h:204
bool initIsotopeDist_
Definition: SuperHirnParameters.h:208
double maxInterScanRetentionTimeDistance_
Definition: SuperHirnParameters.h:160