OpenMS
2.5.0
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Extracts scans of an mzML file to several files in DTA format.
pot. predecessor tools | DTAExtractor | pot. successor tools |
any signal-/preprocessing tool | - |
The retention time, the m/z ratio (for MS level > 1) and the file extension are appended to the output file name. You can limit the exported spectra by m/z range, retention time range or MS level.
The command line parameters of this tool are:
DTAExtractor -- Extracts spectra of an MS run file to several files in DTA format. Full documentation: http://www.openms.de/documentation/TOPP_DTAExtractor.html Version: 2.5.0-nightly-2020-03-06 Mar 7 2020, 01:22:16, Revision: 84b1398 To cite OpenMS: Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959. Usage: DTAExtractor <options> Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'mzML') -out <file>* Base name of DTA output files (RT, m/z and extension are appended) -mz [min]:[max] M/z range of precursor peaks to extract. This option is ignored for MS level 1 (default: ':') -rt [min]:[max] Retention time range of spectra to extract (default: ':') -level i[,j]... MS levels to extract (default: '1,2,3') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool: