OpenMS
2.5.0
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Resampler can be used to transform an LC/MS map into a resampled map.
pot. predecessor tools | Resampler | pot. successor tools |
- | NoiseFilterSGolay |
When writing an peak file, all spectra are resampled with a new sampling rate. The number of spectra does not change.
The command line parameters of this tool are:
Resampler -- Transforms an LC/MS map into a resampled map or a PNG image. Full documentation: http://www.openms.de/documentation/TOPP_Resampler.html Version: 2.5.0-nightly-2020-03-06 Mar 7 2020, 01:22:16, Revision: 84b1398 To cite OpenMS: Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959. Usage: Resampler <options> Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'mzML') -out <file>* Output file in mzML format (valid formats: 'mzML') -sampling_rate <rate> New sampling rate in m/z dimension (in Th unless ppm flag is set) (default : '0.1' min: '0.0') -ppm Sampling_rate is given in ppm -align_sampling Ensures that sampling is performed equally across the map (same raster is used for all spectra) -min_int_cutoff <min intensity> Intensity cutoff for peaks to be stored in output spectrum (only peaks above this cutoff will be stored, -1 means store all data) (default: '-1.0 ') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool: