Identifies peptides in MS/MS spectra.

pot. predecessor tools	$\longrightarrow$ SimpleSearchEngine $\longrightarrow$	pot. successor tools
any signal-/preprocessing tool (in mzML format)	$\longrightarrow$ SimpleSearchEngine $\longrightarrow$	IDFilter or any protein/peptide processing tool

This search engine is mainly for educational/benchmarking/prototyping use cases. It lacks behind in speed and/or quality of results when compared to state-of-the-art search engines.

Note: Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool: