OpenMS
2.5.0
|
Filters the top Peaks in the given spectra according to a given schema/thresholdset
pot. predecessor tools | SpectraFilter | pot. successor tools |
PeakPickerWavelet | any tool operating on MS peak data (in mzML format) |
The command line parameters of this tool are:
SpectraFilterThresholdMower -- Applies thresholdfilter to peak spectra. Full documentation: http://www.openms.de/documentation/TOPP_SpectraFilterThresholdMower.html Version: 2.5.0-nightly-2020-03-06 Mar 7 2020, 01:22:16, Revision: 84b1398 To cite OpenMS: Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959. Usage: SpectraFilterThresholdMower <options> This tool has algorithm parameters that are not shown here! Please check the ini file for a detailed descript ion or use the --helphelp option. Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'mzML') -out <file>* Output file (valid formats: 'mzML') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced) The following configuration subsections are valid: - algorithm Algorithm parameter subsection. You can write an example INI file using the '-write_ini' option. Documentation of subsection parameters can be found in the doxygen documentation or the INIFileEditor. For more information, please consult the online documentation for this tool: - http://www.openms.de/documentation/TOPP_SpectraFilterThresholdMower.html
INI file documentation of this tool: