TransformationDescription.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Clemens Groepl, Hendrik Weisser $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/TransformationModel.h>
#include <iostream>
#include <map>
 
namespace OpenMS
{
  class OPENMS_DLLAPI TransformationDescription
  {
    // friend class MapAlignmentAlgorithm;
 
public:
 
    struct TransformationStatistics
    {
      TransformationStatistics& operator=(const TransformationStatistics& rhs)
      {
        if (this == &rhs)
          return *this;
 
        // percents = rhs.percents; // const, cannot be assigned
        xmin = rhs.xmin;
        xmax = rhs.xmax;
        ymin = rhs.ymin;
        ymax = rhs.ymax;
        percentiles_before = rhs.percentiles_before;
        percentiles_after = rhs.percentiles_after;
 
        return *this;
      }
 
      const std::vector<Size> percents = {100, 99, 95, 90, 75, 50, 25};
      double xmin = 0; 
      double xmax = 0; 
      double ymin = 0; 
      double ymax = 0; 
      
      std::map<Size, double> percentiles_before; 
      std::map<Size, double> percentiles_after; 
    };
    
 
    typedef TransformationModel::DataPoint DataPoint;
    typedef TransformationModel::DataPoints DataPoints;
 
    TransformationDescription();
    explicit TransformationDescription(const DataPoints& data);
    ~TransformationDescription();
 
    TransformationDescription(const TransformationDescription& rhs);
    TransformationDescription& operator=(const TransformationDescription& rhs);
 
    void fitModel(const String& model_type, const Param& params = Param());
 
    double apply(double value) const;
 
    const String& getModelType() const;
 
    static void getModelTypes(StringList& result);
 
    void setDataPoints(const DataPoints& data);
 
    void setDataPoints(const std::vector<std::pair<double, double> >& data);
 
    const DataPoints& getDataPoints() const;
 
    const Param& getModelParameters() const;
 
    void invert();
 
    void getDeviations(std::vector<double>& diffs, bool do_apply = false,
                       bool do_sort = true) const;
 
    TransformationStatistics getStatistics() const;
 
    void printSummary(std::ostream& os = std::cout) const;
 
protected:
    DataPoints data_;
    String model_type_;
    TransformationModel* model_;
  };
 
} // end of namespace OpenMS