openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h File Reference

#include <string>
#include <vector>
#include <boost/shared_ptr.hpp>
#include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>

Go to the source code of this file.

Classes
struct	OSBinaryDataArray
	The datastructures used by the OpenSwath interfaces. More...
struct	OSChromatogramMeta
	Identifying information for a chromatogram. More...
struct	OSChromatogram
	A single chromatogram. More...
struct	OSSpectrumMeta
	Identifying information for a spectrum. More...
struct	OSSpectrumMeta::RTLess
	Comparator for the retention time. More...
struct	OSSpectrum
	The structure that captures the generation of a peak list (including the underlying acquisitions) More...

Namespaces
	OpenSwath

Typedefs
typedef OSBinaryDataArray	BinaryDataArray
typedef boost::shared_ptr< BinaryDataArray >	BinaryDataArrayPtr
typedef OSChromatogramMeta	ChromatogramMeta
typedef boost::shared_ptr< ChromatogramMeta >	ChromatogramMetaPtr
typedef OSChromatogram	Chromatogram
typedef boost::shared_ptr< Chromatogram >	ChromatogramPtr
typedef OSSpectrumMeta	SpectrumMeta
typedef boost::shared_ptr< SpectrumMeta >	SpectrumMetaPtr
typedef OSSpectrum	Spectrum
typedef boost::shared_ptr< Spectrum >	SpectrumPtr

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Class Documentation

OpenSwath::OSBinaryDataArray

struct OpenSwath::OSBinaryDataArray

The datastructures used by the OpenSwath interfaces.

Many of them are closely related to Proteowizard data structures, originally written by Darren Kessner and released under the Apache 2.0 licence.

Original author: Darren Kessner darre.nosp@m.n@pr.nosp@m.oteow.nosp@m.izar.nosp@m.d.org

Copyright 2007 Spielberg Family Center for Applied Proteomics Cedars-Sinai Medical Center, Los Angeles, California 90048

The following datastructures are used :

• BinaryDataArray : a struct that holds a std::vector<double> with the data
• ChromatogramMeta : meta information of a chromatogram (index)
• Chromatogram : chromatogram data. Contains a vector of pointers to BinaryDataArray, the first one is time array (RT), the second one is intensity
• SpectrumMeta : meta information of a spectrum (index, identifier, RT, ms_level)
• Spectrum : spectrum data. Contains a vector of pointers to BinaryDataArray, the first one is mz array, the second one is intensity The structure into which encoded binary data goes.

Class Members
vector< double >	data	this optional attribute may reference the 'id' attribute of the appropriate dataProcessing. the binary data.
string	description	(optional) data description for non-standard arrays.