OpenMS  2.6.0
DataFilterDialog.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Marc Sturm $
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34 
35 
36 #pragma once
37 
38 // OpenMS_GUI config
39 #include <OpenMS/VISUAL/OpenMS_GUIConfig.h>
40 
42 
43 #include <QDialog>
44 
45 namespace Ui
46 {
47  class DataFilterDialogTemplate;
48 }
49 
50 namespace OpenMS
51 {
56  class OPENMS_GUI_DLLAPI DataFilterDialog :
57  public QDialog
58  {
59  Q_OBJECT
60 
61 public:
64 
66  virtual ~DataFilterDialog();
67 
68 protected slots:
70  void check_();
72  void field_changed_(const QString &);
74  void op_changed_(const QString &);
75 
76 protected:
79 
80 private:
83 
84  Ui::DataFilterDialogTemplate* ui_;
85  };
86 
87 }
LogStream.h
OpenMS::FileTypes::IDXML
OpenMS identification format (.idXML)
Definition: FileTypes.h:66
OpenMS::TOPPBase
Base class for TOPP applications.
Definition: TOPPBase.h:144
OpenMS::Param::copy
Param copy(const String &prefix, bool remove_prefix=false) const
Returns a new Param object containing all entries that start with prefix.
FileHandler.h
FileTypes.h
OpenMS::writtenDigits
constexpr Int writtenDigits(const FloatingPointType &=FloatingPointType())
Number of digits commonly used for writing a floating point type (a.k.a. precision)....
Definition: Types.h:294
OpenMS::Ms2IdentificationRate::IdentificationRateData
Structure for storing results.
Definition: Ms2IdentificationRate.h:60
DBSuitability.h
OpenMS::FASTAFile
This class serves for reading in and writing FASTA files.
Definition: FASTAFile.h:64
OpenMS::DataFilterDialog
Dialog for creating and changing a DataFilter.
Definition: DataFilterDialog.h:56
OpenMS::Constants::k
const double k
OpenMS::MzMLFile
File adapter for MzML files.
Definition: MzMLFile.h:55
OpenMS::String
A more convenient string class.
Definition: String.h:59
OpenMS::Ms2IdentificationRate::IdentificationRateData::identification_rate
double identification_rate
Definition: Ms2IdentificationRate.h:64
OpenMS::DataFilters::DataFilter
Representation of a peak/feature filter combining FilterType, FilterOperation and a value.
Definition: DataFilters.h:74
MzMLFile.h
OpenMS::MSExperiment
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:77
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
OpenMS::DBSuitability::SuitabilityData::num_top_novo
Size num_top_novo
number of times the top hit is considered to be a deNovo hit
Definition: DBSuitability.h:74
IdXMLFile.h
OpenMS::Constants::c
const double c
QDialog
OpenMS::DBSuitability::compute
void compute(std::vector< PeptideIdentification > pep_ids)
Computes suitability of a database used to search a mzML.
OpenMS::FileTypes::MZIDENTML
mzIdentML (HUPO PSI AnalysisXML followup format) (.mzid)
Definition: FileTypes.h:77
OpenMS::DataFilterDialog::filter_
DataFilters::DataFilter & filter_
Reference to the filter that is modified.
Definition: DataFilterDialog.h:78
OpenMS::DBSuitability
This class holds the functionality of calculating the database suitability.
Definition: DBSuitability.h:66
OpenMS::DBSuitability::SuitabilityData::num_top_db
Size num_top_db
number of times the top hit is considered to be a database hit
Definition: DBSuitability.h:77
QWidget
OpenMS::DBSuitability::SuitabilityData::suitability
double suitability
Definition: DBSuitability.h:99
OpenMS::IdXMLFile::load
void load(const String &filename, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids)
Loads the identifications of an idXML file without identifier.
OpenMS::MzIdentMLFile
File adapter for MzIdentML files.
Definition: MzIdentMLFile.h:67
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::DBSuitability::SuitabilityData
struct to store results
Definition: DBSuitability.h:71
OpenMS::MzMLFile::load
void load(const String &filename, PeakMap &map)
Loads a map from a MzML file. Spectra and chromatograms are sorted by default (this can be disabled u...
OpenMS::DBSuitability::SuitabilityData::num_interest
Size num_interest
number of times a deNovo hit scored on top of a database hit
Definition: DBSuitability.h:80
Ui
Definition: SwathWizardBase.h:62
FASTAFile.h
OpenMS::FileHandler
Facilitates file handling by file type recognition.
Definition: FileHandler.h:62
OpenMS::FileTypes::Type
Type
Actual file types enum.
Definition: FileTypes.h:58
DataFilters.h
OpenMS::FileHandler::getType
static FileTypes::Type getType(const String &filename)
Tries to determine the file type (by name or content)
OpenMS::DefaultParamHandler::setParameters
void setParameters(const Param &param)
Sets the parameters.
OpenMS::DefaultParamHandler::getDefaults
const Param & getDefaults() const
Non-mutable access to the default parameters.
Ms2IdentificationRate.h
OpenMS::Ms2IdentificationRate::compute
void compute(const FeatureMap &feature_map, const MSExperiment &exp, bool assume_all_target=false)
computes Ms2 Identification Rate with FeatureMap
OpenMS::Citation
Stores Citations for individual TOPP tools.
Definition: TOPPBase.h:70
OpenMS::MzIdentMLFile::load
void load(const String &filename, std::vector< ProteinIdentification > &poid, std::vector< PeptideIdentification > &peid)
Loads the identifications from a MzIdentML file.
main
int main(int argc, const char **argv)
Definition: INIFileEditor.cpp:73
MSExperiment.h
OPENMS_LOG_ERROR
#define OPENMS_LOG_ERROR
Macro to be used if non-fatal error are reported (processing continues)
Definition: LogStream.h:455
OpenMS::PeptideIdentification
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:62
OpenMS::FASTAFile::load
static void load(const String &filename, std::vector< FASTAEntry > &data)
loads a FASTA file given by 'filename' and stores the information in 'data'
OpenMS::PeakFileOptions
Options for loading files containing peak data.
Definition: PeakFileOptions.h:47
OpenMS::Ms2IdentificationRate::IdentificationRateData::num_peptide_identification
Size num_peptide_identification
Definition: Ms2IdentificationRate.h:62
OpenMS::Ms2IdentificationRate::getResults
const std::vector< IdentificationRateData > & getResults() const
returns results
OpenMS::DBSuitability::SuitabilityData::num_re_ranked
Size num_re_ranked
Definition: DBSuitability.h:84
OpenMS::Param
Management and storage of parameters / INI files.
Definition: Param.h:73
OPENMS_LOG_INFO
#define OPENMS_LOG_INFO
Macro if a information, e.g. a status should be reported.
Definition: LogStream.h:465
OpenMS::PeakFileOptions::setMSLevels
void setMSLevels(const std::vector< Int > &levels)
sets the desired MS levels for peaks to load
OpenMS::Ms2IdentificationRate
This class is a metric for the QualityControl-ToppTool.
Definition: Ms2IdentificationRate.h:56
PeptideIdentification.h
OpenMS::DataFilterDialog::ui_
Ui::DataFilterDialogTemplate * ui_
Definition: DataFilterDialog.h:84
OpenMS::MzMLFile::setOptions
void setOptions(const PeakFileOptions &)
set options for loading/storing
MzIdentMLFile.h
TOPPBase.h
OpenMS::DBSuitability::getResults
const std::vector< SuitabilityData > & getResults() const
Returns results calculated by this metric.
OpenMS::Ms2IdentificationRate::IdentificationRateData::num_ms2_spectra
Size num_ms2_spectra
Definition: Ms2IdentificationRate.h:63
OpenMS::IdXMLFile
Used to load and store idXML files.
Definition: IdXMLFile.h:63
OpenMS::FASTAFile::store
static void store(const String &filename, const std::vector< FASTAEntry > &data)
stores the data given by 'data' at the file 'filename'