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ANALYSIS
DENOVO
DeNovoPostScoring.h
Go to the documentation of this file.
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Timo Sachsenberg $
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// $Authors: Sandro Andreotti, Andreas Bertsch$
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/DATASTRUCTURES/DefaultParamHandler.h
>
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#include <
OpenMS/METADATA/PeptideIdentification.h
>
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#include <
OpenMS/KERNEL/StandardTypes.h
>
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#include <vector>
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namespace
OpenMS
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{
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class
OPENMS_DLLAPI
DeNovoPostScoring
:
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public
DefaultParamHandler
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{
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public
:
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DeNovoPostScoring
();
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~
DeNovoPostScoring
()
override
;
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DeNovoPostScoring
(
const
DeNovoPostScoring
& rhs);
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DeNovoPostScoring
& operator=(
const
DeNovoPostScoring
& rhs);
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virtual
void
apply(std::vector<PeptideIdentification> & identifications,
const
PeakMap
& exp) = 0;
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virtual
void
apply(
PeptideIdentification
& identification,
const
PeakSpectrum
& spec) = 0;
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};
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}
// namespace OpenMS
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DefaultParamHandler.h
OpenMS::MSExperiment
In-Memory representation of a mass spectrometry experiment.
Definition:
MSExperiment.h:77
OpenMS::DefaultParamHandler
A base class for all classes handling default parameters.
Definition:
DefaultParamHandler.h:92
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
OpenMS::DeNovoPostScoring
Base class for ion scoring implementation for de novo algorithms.
Definition:
DeNovoPostScoring.h:51
OpenMS::PeptideIdentification
Represents the peptide hits for a spectrum.
Definition:
PeptideIdentification.h:62
PeptideIdentification.h
OpenMS::MSSpectrum
The representation of a 1D spectrum.
Definition:
MSSpectrum.h:67
StandardTypes.h
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