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DocumentIDTagger.h
Go to the documentation of this file.
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Chris Bielow $
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// $Authors: $
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/CONCEPT/Exception.h
>
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#include <
OpenMS/DATASTRUCTURES/String.h
>
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#include <
OpenMS/METADATA/DocumentIdentifier.h
>
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#include <vector>
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namespace
OpenMS
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{
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class
OPENMS_DLLAPI
DocumentIDTagger
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{
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private
:
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DocumentIDTagger
();
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bool
getID_(
String
&
id
,
Int
& free,
bool
idcount_only)
const
;
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public
:
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DocumentIDTagger
(
String
toolname);
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DocumentIDTagger
(
const
DocumentIDTagger
& source) =
default
;
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~
DocumentIDTagger
();
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DocumentIDTagger
& operator=(
const
DocumentIDTagger
& source) =
default
;
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bool
operator==
(
const
DocumentIDTagger
& source)
const
;
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bool
operator!=
(
const
DocumentIDTagger
& source)
const
;
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String
getPoolFile()
const
;
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void
setPoolFile(
const
String
& file);
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bool
tag(
DocumentIdentifier
& map)
const
;
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bool
countFreeIDs(
Int
& free)
const
;
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protected
:
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String
toolname_
;
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String
pool_file_
;
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};
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}
// namespace OpenMS
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OpenMS::DocumentIDTagger::toolname_
String toolname_
name of the calling TOPP tool
Definition:
DocumentIDTagger.h:125
DocumentIdentifier.h
OpenMS::String
A more convenient string class.
Definition:
String.h:59
KDTree::operator!=
bool operator!=(_Iterator< _Val, _Ref, _Ptr > const &, _Iterator< _Val, _Ref, _Ptr > const &)
Definition:
KDTree.h:824
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
Exception.h
int
OpenMS::DocumentIdentifier
Manage source document information.
Definition:
DocumentIdentifier.h:55
OpenMS::Internal::operator==
bool operator==(const IDBoostGraph::ProteinGroup &lhs, const IDBoostGraph::ProteinGroup &rhs)
String.h
OpenMS::DocumentIDTagger::pool_file_
String pool_file_
location of the ID pool
Definition:
DocumentIDTagger.h:128
OpenMS::DocumentIDTagger
Tags OpenMS file containers with a DocumentID.
Definition:
DocumentIDTagger.h:54
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