OpenMS  2.6.0
FeatureFinderAlgorithmSH.h
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34 
35 #pragma once
36 
37 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>
38 
40 
41 namespace OpenMS
42 {
99  class SUPERHIRN_DLLAPI FeatureFinderAlgorithmSH :
100  public FeatureFinderAlgorithm,
101  public FeatureFinderDefs
102  {
103 
104 public:
105  typedef Peak1D PeakType;
106  typedef FeatureFinderAlgorithm::MapType MapType; // MSExperiment
108 
110 
111  unsigned int getNativeScanId(String native_id);
112 
113  void run() override;
114 
115  static FeatureFinderAlgorithm* create();
116 
117  static const String getProductName();
118 
119 protected:
122 
123  };
124 
125 }
126 
OpenMS::FeatureFinderAlgorithmSH::PeakType
Peak1D PeakType
Definition: FeatureFinderAlgorithmSH.h:105
OpenMS::FeatureFinderDefs
The purpose of this struct is to provide definitions of classes and typedefs which are used throughou...
Definition: FeatureFinderDefs.h:50
OpenMS::String
A more convenient string class.
Definition: String.h:59
OpenMS::MSExperiment
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:77
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::FeatureFinderAlgorithmSH
The Superhirn FeatureFinderAlgorithm.
Definition: FeatureFinderAlgorithmSH.h:99
OpenMS::FeatureFinderAlgorithmSH::MapType
FeatureFinderAlgorithm::MapType MapType
Definition: FeatureFinderAlgorithmSH.h:106
OpenMS::Peak1D
A 1-dimensional raw data point or peak.
Definition: Peak1D.h:54
OpenMS::FeatureFinderAlgorithm
Abstract base class for FeatureFinder algorithms.
Definition: FeatureFinderAlgorithm.h:74
OpenMS::FeatureFinderAlgorithm::features_
FeatureMap * features_
Output data pointer.
Definition: FeatureFinderAlgorithm.h:142
OpenMS::FeatureFinderAlgorithmSH::map_
MapType map_
Definition: FeatureFinderAlgorithmSH.h:120
OpenMS::MSSpectrum
The representation of a 1D spectrum.
Definition: MSSpectrum.h:67
FeatureFinderAlgorithm.h
OpenMS::FeatureFinderAlgorithmSH::SpectrumType
MapType::SpectrumType SpectrumType
Definition: FeatureFinderAlgorithmSH.h:107