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IsotopeDistributionCache.h
Go to the documentation of this file.
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Lars Nilse $
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// $Authors: Steffen Sass, Holger Plattfaut, Bastian Blank $
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/KERNEL/StandardTypes.h
>
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#include <
OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h
>
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namespace
OpenMS
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{
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class
OPENMS_DLLAPI
IsotopeDistributionCache
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{
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public
:
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typedef
FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
TheoreticalIsotopePattern
;
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IsotopeDistributionCache
(
double
max_mass,
double
mass_window_width,
double
intensity_percentage = 0,
double
intensity_percentage_optional = 0);
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const
TheoreticalIsotopePattern
& getIsotopeDistribution(
double
mass)
const
;
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private
:
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std::vector<TheoreticalIsotopePattern>
isotope_distributions_
;
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double
mass_window_width_
;
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};
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}
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OpenMS::FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
Helper structure for a theoretical isotope pattern used in FeatureFinderAlgorithmPicked.
Definition:
FeatureFinderAlgorithmPickedHelperStructs.h:173
FeatureFinderAlgorithmPickedHelperStructs.h
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
OpenMS::IsotopeDistributionCache
Pre-calculate isotope distributions for interesting mass ranges.
Definition:
IsotopeDistributionCache.h:45
OpenMS::IsotopeDistributionCache::TheoreticalIsotopePattern
FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern TheoreticalIsotopePattern
Definition:
IsotopeDistributionCache.h:48
OpenMS::IsotopeDistributionCache::isotope_distributions_
std::vector< TheoreticalIsotopePattern > isotope_distributions_
Vector of pre-calculated isotope distributions for several mass windows.
Definition:
IsotopeDistributionCache.h:57
OpenMS::IsotopeDistributionCache::mass_window_width_
double mass_window_width_
Definition:
IsotopeDistributionCache.h:59
StandardTypes.h
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